BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0159400 Os02g0159400|AK109550
(263 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0159400 Hypothetical protein 508 e-144
Os05g0482600 WD40-like domain containing protein 68 6e-12
>Os02g0159400 Hypothetical protein
Length = 263
Score = 508 bits (1307), Expect = e-144, Method: Compositional matrix adjust.
Identities = 252/263 (95%), Positives = 252/263 (95%)
Query: 1 MKLSLISDGDIPDSQDDQGSGGRADGRQVLEXXXXXXXXXXXVFLEEEDEDENAMKVDEE 60
MKLSLISDGDIPDSQDDQGSGGRADGRQVLE VFLEEEDEDENAMKVDEE
Sbjct: 1 MKLSLISDGDIPDSQDDQGSGGRADGRQVLERGGGGGKRRRRVFLEEEDEDENAMKVDEE 60
Query: 61 AVILSCARGGPAGVSTAKIDGCIDKQDGQGSSKQRKKSCSTVMKLQFREIGLHCSLRTCG 120
AVILSCARGGPAGVSTAKIDGCIDKQDGQGSSKQRKKSCSTVMKLQFREIGLHCSLRTCG
Sbjct: 61 AVILSCARGGPAGVSTAKIDGCIDKQDGQGSSKQRKKSCSTVMKLQFREIGLHCSLRTCG 120
Query: 121 ISRFVPTPSTFSHEVFSKIKNNKVVFDIYRCKDVIRHLERPIRKRSAVLQILPLKDLVAV 180
ISRFVPTPSTFSHEVFSKIKNNKVVFDIYRCKDVIRHLERPIRKRSAVLQILPLKDLVAV
Sbjct: 121 ISRFVPTPSTFSHEVFSKIKNNKVVFDIYRCKDVIRHLERPIRKRSAVLQILPLKDLVAV 180
Query: 181 VLCSGLSFLLSRVTNKMISILNRYDDEIIVSIFYNKEDKSVITTSSRLFDGCMSRQVTST 240
VLCSGLSFLLSRVTNKMISILNRYDDEIIVSIFYNKEDKSVITTSSRLFDGCMSRQVTST
Sbjct: 181 VLCSGLSFLLSRVTNKMISILNRYDDEIIVSIFYNKEDKSVITTSSRLFDGCMSRQVTST 240
Query: 241 PLECIRSNKQNNGQQIFESENIK 263
PLECIRSNKQNNGQQIFESENIK
Sbjct: 241 PLECIRSNKQNNGQQIFESENIK 263
>Os05g0482600 WD40-like domain containing protein
Length = 455
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 92/171 (53%), Gaps = 13/171 (7%)
Query: 94 QRKKSCSTVMKLQFREIGLHCSLRTCGISRFVPTPSTFSHEVFSKIKNNKVVFDIYRCKD 153
+ + + ++V KLQ REI C R +S + E F I+ + FD + K+
Sbjct: 25 RHEAAVNSVRKLQRREIS-SCRDRAFSMSA--------AQERFRNIQLQEE-FDTHDPKE 74
Query: 154 VIRHLERP-IRKRSAVLQILPLKDLVAVVLCSGLSFLLSRVTNKMISILNRYDDEIIVSI 212
L P +RKRS +++I+ +D+V + SG+ SR TN+ I LN DE+I S+
Sbjct: 75 --NSLLLPYLRKRSKIIEIVAARDIVFALSQSGVCAAFSRETNRRICFLNGSPDEVIRSL 132
Query: 213 FYNKEDKSVITTSSRLFDGCMSRQVTSTPLECIRSNKQNNGQQIFESENIK 263
FYNK ++S+IT S + + + +T +E IR K + G +FESE++K
Sbjct: 133 FYNKNNESLITVSVYGSENFSALRCRTTRIEYIRRAKPDAGFPLFESESLK 183
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.135 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,630,485
Number of extensions: 342708
Number of successful extensions: 960
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 960
Number of HSP's successfully gapped: 3
Length of query: 263
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 164
Effective length of database: 11,866,615
Effective search space: 1946124860
Effective search space used: 1946124860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 155 (64.3 bits)