BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0155300 Os02g0155300|AK067517
         (108 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0155300  Conserved hypothetical protein                      223   3e-59
Os02g0156300  Similar to Serine/threonine-protein kinase BRI...   103   2e-23
Os02g0153300  Conserved hypothetical protein                       62   1e-10

>Os02g0155300 Conserved hypothetical protein
          Length = 108

 Score =  223 bits (567), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 108/108 (100%), Positives = 108/108 (100%)

Query: 1   MPSHAQQSMPFRHDMAMPLSCDSPARNRRRELFSCSRHAMVELAMESSSNNKAAAARPEK 60
           MPSHAQQSMPFRHDMAMPLSCDSPARNRRRELFSCSRHAMVELAMESSSNNKAAAARPEK
Sbjct: 1   MPSHAQQSMPFRHDMAMPLSCDSPARNRRRELFSCSRHAMVELAMESSSNNKAAAARPEK 60

Query: 61  GIPSLLLHRECGASFMISPITAVFGLRIWQLIFVREKLHCSVRIYIHN 108
           GIPSLLLHRECGASFMISPITAVFGLRIWQLIFVREKLHCSVRIYIHN
Sbjct: 61  GIPSLLLHRECGASFMISPITAVFGLRIWQLIFVREKLHCSVRIYIHN 108



>Os02g0156300 Similar to Serine/threonine-protein kinase BRI1-like 2 precursor
           (EC 2.7.1.37) (BRASSINOSTEROID INSENSITIVE 1-like
           protein 2) (Protein VASCULAR HIGHWAY 1)
          Length = 113

 Score =  103 bits (258), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 56/82 (68%), Positives = 59/82 (71%)

Query: 1   MPSHAQQSMPFRHDMAMPLSCDSPARNRRRELFSCSRHAMVELAMESSSNNKAAAARPEK 60
           MPSH QQ +PF HDMAMP SCDS ARN RRELFSCS  AM E+A   SS+N AA ARPE 
Sbjct: 28  MPSHTQQFVPFCHDMAMPPSCDSSARNWRRELFSCSTQAMAEVATMRSSSNNAAVARPEY 87

Query: 61  GIPSLLLHRECGASFMISPITA 82
           GI SLLLH ECG   M S I A
Sbjct: 88  GIASLLLHGECGVICMNSLIPA 109



>Os02g0153300 Conserved hypothetical protein
          Length = 218

 Score = 62.0 bits (149), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/67 (52%), Positives = 41/67 (61%)

Query: 2   PSHAQQSMPFRHDMAMPLSCDSPARNRRRELFSCSRHAMVELAMESSSNNKAAAARPEKG 61
           PSH QQS  FRHD A P S + P RN RREL SCS H +V  A ES+S++  A     K 
Sbjct: 123 PSHLQQSAAFRHDTARPPSLERPERNWRRELLSCSVHELVGEARESNSSSAKARLNLRKS 182

Query: 62  IPSLLLH 68
           +  LLLH
Sbjct: 183 MKHLLLH 189



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.326    0.133    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,774,689
Number of extensions: 136426
Number of successful extensions: 443
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 445
Number of HSP's successfully gapped: 3
Length of query: 108
Length of database: 17,035,801
Length adjustment: 76
Effective length of query: 32
Effective length of database: 13,067,537
Effective search space: 418161184
Effective search space used: 418161184
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 149 (62.0 bits)