BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0139100 Os02g0139100|AK065722
         (202 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0139100  Conserved hypothetical protein                      341   2e-94
Os06g0703800  Conserved hypothetical protein                      280   7e-76

>Os02g0139100 Conserved hypothetical protein
          Length = 202

 Score =  341 bits (874), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 171/188 (90%), Positives = 171/188 (90%)

Query: 15  SSYRYWVREATGDAAPLPVPRKLDXXXXXXXXXXXXXXXXXSVWNQAGTWEEKNLNSWAN 74
           SSYRYWVREATGDAAPLPVPRKLD                 SVWNQAGTWEEKNLNSWAN
Sbjct: 15  SSYRYWVREATGDAAPLPVPRKLDATAAAAANGNGNPPPLGSVWNQAGTWEEKNLNSWAN 74

Query: 75  SRIKEMLGSLDSLEFPTGKASLDGVSKCIGDAFLVTVRNKKRVGYTYELSLKFKGEWLIK 134
           SRIKEMLGSLDSLEFPTGKASLDGVSKCIGDAFLVTVRNKKRVGYTYELSLKFKGEWLIK
Sbjct: 75  SRIKEMLGSLDSLEFPTGKASLDGVSKCIGDAFLVTVRNKKRVGYTYELSLKFKGEWLIK 134

Query: 135 EEKMKVKGHLDIPEFSFGELEDLEVEVRFTDDKGLASDDKRQICKDLKSFLSPIREKLRA 194
           EEKMKVKGHLDIPEFSFGELEDLEVEVRFTDDKGLASDDKRQICKDLKSFLSPIREKLRA
Sbjct: 135 EEKMKVKGHLDIPEFSFGELEDLEVEVRFTDDKGLASDDKRQICKDLKSFLSPIREKLRA 194

Query: 195 FEEELKDR 202
           FEEELKDR
Sbjct: 195 FEEELKDR 202



>Os06g0703800 Conserved hypothetical protein
          Length = 197

 Score =  280 bits (715), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 142/187 (75%), Positives = 153/187 (81%), Gaps = 3/187 (1%)

Query: 16  SYRYWVREATGDAAPLPVPRKLDXXXXXXXXXXXXXXXXXSVWNQAGTWEEKNLNSWANS 75
           SY YWVREATGDAAPLP PRK+D                 SVWN+AGTWEEKNLNSWAN 
Sbjct: 14  SYSYWVREATGDAAPLPAPRKIDAADLAAKPAPTTLG---SVWNKAGTWEEKNLNSWANG 70

Query: 76  RIKEMLGSLDSLEFPTGKASLDGVSKCIGDAFLVTVRNKKRVGYTYELSLKFKGEWLIKE 135
           RIK++LGSLD LEF TGKAS+  VSKC GDAFLVTVRNKKRVGYTYEL LKFKGEWLIKE
Sbjct: 71  RIKDLLGSLDPLEFSTGKASVYEVSKCSGDAFLVTVRNKKRVGYTYELGLKFKGEWLIKE 130

Query: 136 EKMKVKGHLDIPEFSFGELEDLEVEVRFTDDKGLASDDKRQICKDLKSFLSPIREKLRAF 195
           E  KVKG+LDIPEFSFGELEDLEV++ FTD K L+SD+K QI KDLKSFL+PIREKLR F
Sbjct: 131 ENKKVKGYLDIPEFSFGELEDLEVQISFTDIKDLSSDNKAQISKDLKSFLAPIREKLRKF 190

Query: 196 EEELKDR 202
           EEELKDR
Sbjct: 191 EEELKDR 197



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.134    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,234,052
Number of extensions: 233803
Number of successful extensions: 512
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 510
Number of HSP's successfully gapped: 2
Length of query: 202
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 106
Effective length of database: 12,023,257
Effective search space: 1274465242
Effective search space used: 1274465242
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 153 (63.5 bits)