BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0138100 Os02g0138100|Os02g0138100
         (152 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0138100  Conserved hypothetical protein                      210   3e-55
Os06g0704200  Conserved hypothetical protein                      119   7e-28

>Os02g0138100 Conserved hypothetical protein
          Length = 152

 Score =  210 bits (535), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 104/152 (68%), Positives = 104/152 (68%)

Query: 1   MRPWLVXXXXXAWHGVVIRMLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MRPWLV     AWHGVVIRMLQ                                      
Sbjct: 1   MRPWLVPPPPPAWHGVVIRMLQAPAVVALAAVLAASTSPATAAAAAADPAPQEEAAAEGG 60

Query: 61  XXXXXCNVPPTLSGEDKQAEKIKHPKSASAMRCTSKCVSTCVLGGAGSPGVDGPFNIRRP 120
                CNVPPTLSGEDKQAEKIKHPKSASAMRCTSKCVSTCVLGGAGSPGVDGPFNIRRP
Sbjct: 61  AASTLCNVPPTLSGEDKQAEKIKHPKSASAMRCTSKCVSTCVLGGAGSPGVDGPFNIRRP 120

Query: 121 LVVFKEDFRSRQYCLLECSDICNLIKDGEDGQ 152
           LVVFKEDFRSRQYCLLECSDICNLIKDGEDGQ
Sbjct: 121 LVVFKEDFRSRQYCLLECSDICNLIKDGEDGQ 152



>Os06g0704200 Conserved hypothetical protein
          Length = 113

 Score =  119 bits (299), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 59/87 (67%), Positives = 69/87 (79%), Gaps = 7/87 (8%)

Query: 67  NVPPTLSGED-KQAEKIKHPKSASAMRCTSKCVSTCVLGGAGSPGVDGPFNIRRPLVVFK 125
           N+P TLSG D KQ  +IK PKSA A++CTSKCV+TC+ GG      +GP N+R+PLVVFK
Sbjct: 33  NIPQTLSGGDGKQQVRIKRPKSAKALQCTSKCVATCIRGG------EGPLNVRKPLVVFK 86

Query: 126 EDFRSRQYCLLECSDICNLIKDGEDGQ 152
             FRSRQYCL ECSD+CNLIKDGEDGQ
Sbjct: 87  GQFRSRQYCLAECSDVCNLIKDGEDGQ 113



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.138    0.454 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,256,737
Number of extensions: 145602
Number of successful extensions: 304
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 303
Number of HSP's successfully gapped: 2
Length of query: 152
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 60
Effective length of database: 12,232,113
Effective search space: 733926780
Effective search space used: 733926780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 151 (62.8 bits)