Os02g0138100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0138100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 214.54 | 0.688 | 8.21 | 0.237 | 5.24 | -1.49 | 1.14 | 1.83 | -0.187 | 8.12 | 20.6 | 314 | 20.8 | 17.7 |
| 226.4 | 0.701 | 8.21 | 0.0243 | 5.31 | -1.67 | 1.89 | -- | -0.255 | 8.08 | 20.56 | 334 | 20.4 | 18.3 |
| 217.56 | 0.687 | 8.2 | 0.339 | 5.22 | -1.47 | -- | 2.27 | -0.168 | 8.12 | 20.6 | 318 | 20.7 | 17.6 |
| 233.27 | 0.711 | 8.23 | 0.16 | 4.85 | -1.63 | -- | -- | -0.179 | 8.11 | 20.5 | 390 | 19 | 20 |
| 875.76 | 1.38 | 8.37 | -0.266 | -- | -2.39 | -- | -1.19 | -0.0879 | -- | 14.2 | 1278 | 22.3 | 18.9 |
| 310.35 | 0.826 | 8.33 | -0.436 | 4.18 | -- | 1.9 | -- | -0.495 | 8.01 | -- | -- | -- | -- |
| 321.06 | 0.839 | 8.33 | -0.384 | 4.18 | -- | -- | -- | -0.497 | 7.99 | -- | -- | -- | -- |
| 321.36 | 0.835 | 8.45 | -0.421 | -- | -3.55 | -- | -- | -0.463 | -- | -30.29 | 574 | 5.58 | 19.5 |
| 233.12 | 0.711 | 8.24 | -- | 4.88 | -1.66 | -- | -- | -0.181 | 8.1 | 20.5 | 390 | 19 | 19.9 |
| 1277.11 | 1.67 | 8.44 | -0.342 | -- | -- | -- | -- | -0.443 | -- | -- | -- | -- | -- |
| 324.95 | 0.843 | 8.32 | -- | 4.18 | -- | -- | -- | -0.454 | 7.99 | -- | -- | -- | -- |
| 321 | 0.834 | 8.47 | -- | -- | -3.48 | -- | -- | -0.491 | -- | -20.26 | 607 | 5.55 | 18.9 |
| 1280.21 | 1.67 | 8.43 | -- | -- | -- | -- | -- | -0.405 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 218.58 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 22 |
| 4 | 222.83 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 18 |
| 6 | 223.61 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 22 |
| 16 | 225.91 | temperature | 30 | 270 | < th | dose dependent | rect. | 14 | 21 |
| 19 | 226.19 | temperature | 20 | 270 | > th | dose independent | rect. | 20 | 21 |
| 21 | 226.29 | temperature | 15 | 270 | > th | dose dependent | sin | 8 | NA |
| 28 | 226.80 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 18 |
| 32 | 227.33 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 35 | 227.64 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 12 |
| 49 | 228.72 | temperature | 30 | 270 | < th | dose dependent | sin | 8 | NA |
| 72 | 230.01 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 22 |
| 126 | 232.46 | temperature | 25 | 270 | < th | dose dependent | rect. | 21 | 23 |
| 163 | 233.97 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 22 |
| 185 | 235.17 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 216 | 236.11 | temperature | 25 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 220 | 236.21 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 5 |
| 225 | 236.30 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 326 | 238.65 | temperature | 20 | 10 | > th | dose independent | rect. | 23 | 6 |
| 327 | 238.70 | temperature | 20 | 720 | > th | dose independent | rect. | 13 | 14 |
| 344 | 239.08 | temperature | 20 | 720 | < th | dose independent | rect. | 14 | 14 |
| 354 | 239.30 | temperature | 20 | 720 | < th | dose independent | sin | 14 | NA |
| 367 | 239.45 | temperature | 20 | 720 | < th | dose independent | rect. | 10 | 18 |
| 408 | 240.17 | temperature | 25 | 270 | < th | dose dependent | rect. | 21 | 14 |
| 413 | 240.23 | temperature | 25 | 720 | < th | dose dependent | rect. | 8 | 20 |
| 420 | 240.33 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 426 | 240.42 | temperature | 25 | 720 | < th | dose dependent | rect. | 15 | 14 |
| 454 | 240.84 | temperature | 25 | 720 | < th | dose dependent | sin | 13 | NA |
| 476 | 241.12 | temperature | 20 | 10 | > th | dose independent | rect. | 23 | 17 |
| 531 | 241.78 | temperature | 20 | 10 | > th | dose independent | rect. | 8 | 21 |
| 558 | 242.17 | temperature | 20 | 270 | < th | dose independent | rect. | 15 | 20 |
| 580 | 242.49 | temperature | 20 | 270 | < th | dose independent | rect. | 21 | 23 |
| 606 | 242.75 | temperature | 20 | 270 | < th | dose independent | rect. | 11 | 22 |
| 621 | 242.91 | temperature | 20 | 270 | < th | dose independent | sin | 9 | NA |
| 632 | 243.02 | temperature | 20 | 720 | > th | dose independent | rect. | 14 | 20 |
| 670 | 243.31 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 10 |
| 737 | 243.93 | temperature | 20 | 720 | < th | dose independent | rect. | 21 | 5 |
| 756 | 244.07 | temperature | 20 | 270 | > th | dose independent | no | NA | NA |
| 813 | 244.51 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 19 |
| 819 | 244.55 | temperature | 20 | 270 | < th | dose independent | no | NA | NA |
| 822 | 244.56 | temperature | 20 | 270 | < th | dose independent | rect. | 18 | 23 |
| 844 | 244.74 | temperature | 25 | 1440 | < th | dose dependent | rect. | 6 | 3 |
| 881 | 244.99 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 18 |
| 932 | 245.31 | temperature | 20 | 270 | > th | dose independent | sin | 9 | NA |
| 970 | 245.48 | temperature | 20 | 720 | > th | dose independent | sin | 15 | NA |
| 976 | 245.52 | temperature | 20 | 1440 | > th | dose independent | sin | 6 | NA |
| 981 | 245.55 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 14 |