BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0138100 Os02g0138100|Os02g0138100
         (152 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G78995.1  | chr1:29715433-29716079 REVERSE LENGTH=160          111   2e-25

>AT1G78995.1 | chr1:29715433-29716079 REVERSE LENGTH=160
          Length = 159

 Score =  111 bits (277), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 54/85 (63%), Positives = 66/85 (77%), Gaps = 4/85 (4%)

Query: 67  NVPPTLSGEDKQAEKIKHPKSASAMRCTSKCVSTCVLGGAGSPGVDGPFNIRRPLVVFKE 126
           NVP TLSGED + ++I+ PKS +A +CT KCV+TC+  G G    +GP NIRRPLVVFK+
Sbjct: 78  NVPQTLSGEDCKKQRIQRPKSKNAEKCTVKCVNTCIRSGDG----EGPINIRRPLVVFKQ 133

Query: 127 DFRSRQYCLLECSDICNLIKDGEDG 151
            FRSR YCL+ECSDICNLI DG+ G
Sbjct: 134 GFRSRNYCLVECSDICNLIGDGDYG 158



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.138    0.454 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,568,102
Number of extensions: 86057
Number of successful extensions: 181
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 180
Number of HSP's successfully gapped: 1
Length of query: 152
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 62
Effective length of database: 8,639,129
Effective search space: 535625998
Effective search space used: 535625998
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 107 (45.8 bits)