BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0137500 Os02g0137500|J065167P10
         (92 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0137500  Similar to P300/CBP acetyltransferase-related ...   188   8e-49
Os01g0246100  Protein of unknown function DUF902, CREBbp dom...    64   4e-11

>Os02g0137500 Similar to P300/CBP acetyltransferase-related protein 2
          Length = 92

 Score =  188 bits (477), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 92/92 (100%), Positives = 92/92 (100%)

Query: 1  MTLQLRKMLDLLVHASTCRSGSCQYPNCRKVKGLFRHGMQCKTRASGGCVLCKKMWYMLQ 60
          MTLQLRKMLDLLVHASTCRSGSCQYPNCRKVKGLFRHGMQCKTRASGGCVLCKKMWYMLQ
Sbjct: 1  MTLQLRKMLDLLVHASTCRSGSCQYPNCRKVKGLFRHGMQCKTRASGGCVLCKKMWYMLQ 60

Query: 61 LHARACRDSGCNVPRCRCVGASHFCSVTLPCA 92
          LHARACRDSGCNVPRCRCVGASHFCSVTLPCA
Sbjct: 61 LHARACRDSGCNVPRCRCVGASHFCSVTLPCA 92



>Os01g0246100 Protein of unknown function DUF902, CREBbp domain containing protein
          Length = 1276

 Score = 63.5 bits (153), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 35/79 (44%), Positives = 47/79 (59%), Gaps = 2/79 (2%)

Query: 5    LRKMLDLLVHASTCRSGSCQYPNCRKVKGLFRHGMQCKTRA--SGGCVLCKKMWYMLQLH 62
            L+  L+ LVHAS C   SC    C  +K LF HG++C TRA   GGC +C  MW +L  H
Sbjct: 1184 LQDYLEGLVHASRCFDRSCTSKLCLTLKKLFFHGVRCHTRARGGGGCHMCVFMWKLLFTH 1243

Query: 63   ARACRDSGCNVPRCRCVGA 81
            +  C ++ C+ PRCR + A
Sbjct: 1244 SLLCDNADCSAPRCRDIKA 1262



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.332    0.138    0.493 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,573,883
Number of extensions: 135014
Number of successful extensions: 448
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 445
Number of HSP's successfully gapped: 3
Length of query: 92
Length of database: 17,035,801
Length adjustment: 61
Effective length of query: 31
Effective length of database: 13,850,747
Effective search space: 429373157
Effective search space used: 429373157
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 149 (62.0 bits)