Os01g0246100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF902, CREBbp domain containing protein.
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Os01g0246100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF902, CREBbp domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16.69 | 0.192 | 10.4 | 0.314 | 0.314 | -0.358 | 0.135 | -0.761 | 0.35 | 8.14 | 9.036 | 4334 | -- | -- |
| 17.08 | 0.192 | 10.4 | 0.339 | 0.294 | -0.267 | 0.138 | -- | 0.355 | 7.89 | 8.954 | 4362 | -- | -- |
| 16.75 | 0.191 | 10.4 | 0.314 | 0.319 | -0.365 | -- | -0.768 | 0.349 | 8.12 | 9.072 | 4333 | -- | -- |
| 17 | 0.192 | 10.4 | 0.304 | 0.311 | -0.268 | -- | -- | 0.318 | 7.99 | 9.364 | 4333 | -- | -- |
| 22.04 | 0.219 | 10.4 | 0.329 | -- | -0.302 | -- | -0.757 | 0.353 | -- | 9 | 4361 | -- | -- |
| 18.53 | 0.202 | 10.4 | 0.417 | 0.284 | -- | 0.164 | -- | 0.327 | 7.82 | -- | -- | -- | -- |
| 18.61 | 0.202 | 10.4 | 0.421 | 0.284 | -- | -- | -- | 0.326 | 7.77 | -- | -- | -- | -- |
| 22.1 | 0.219 | 10.4 | 0.361 | -- | -0.174 | -- | -- | 0.327 | -- | 9.275 | 4333 | -- | -- |
| 19.76 | 0.207 | 10.4 | -- | 0.333 | -0.28 | -- | -- | 0.32 | 8.14 | 10 | 4380 | -- | -- |
| 22.96 | 0.224 | 10.4 | 0.424 | -- | -- | -- | -- | 0.33 | -- | -- | -- | -- | -- |
| 23.27 | 0.226 | 10.4 | -- | 0.287 | -- | -- | -- | 0.28 | 7.67 | -- | -- | -- | -- |
| 25.26 | 0.234 | 10.4 | -- | -- | -0.268 | -- | -- | 0.261 | -- | 5.24 | 4312 | -- | -- |
| 27.71 | 0.246 | 10.4 | -- | -- | -- | -- | -- | 0.283 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 15.80 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 2 |
| 2 | 15.80 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 4 |
| 5 | 15.87 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 6 |
| 7 | 15.90 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 8 |
| 9 | 15.96 | wind | 9 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 28 | 16.07 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 10 |
| 33 | 16.11 | wind | 9 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 39 | 16.13 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 8 |
| 43 | 16.15 | wind | 9 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 47 | 16.16 | wind | 7 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 59 | 16.18 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 14 |
| 70 | 16.24 | temperature | 15 | 720 | > th | dose dependent | sin | 9 | NA |
| 78 | 16.28 | wind | 5 | 4320 | > th | dose dependent | rect. | 9 | 1 |
| 82 | 16.29 | wind | 7 | 4320 | > th | dose independent | rect. | 9 | 1 |
| 110 | 16.34 | wind | 9 | 4320 | > th | dose independent | rect. | 13 | 3 |
| 124 | 16.34 | wind | 9 | 4320 | > th | dose dependent | rect. | 18 | 22 |
| 133 | 16.36 | temperature | 30 | 720 | < th | dose dependent | sin | 11 | NA |
| 134 | 16.36 | temperature | 30 | 270 | < th | dose dependent | sin | 6 | NA |
| 138 | 16.36 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 15 |
| 145 | 16.37 | wind | 9 | 4320 | > th | dose dependent | rect. | 20 | 20 |
| 153 | 16.39 | temperature | 15 | 270 | > th | dose dependent | sin | 7 | NA |
| 168 | 16.41 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 4 |
| 170 | 16.41 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 17 |
| 172 | 16.42 | wind | 7 | 4320 | > th | dose independent | rect. | 7 | 3 |
| 184 | 16.43 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 1 |
| 214 | 16.46 | temperature | 10 | 10 | > th | dose dependent | sin | 5 | NA |
| 228 | 16.47 | wind | 9 | 4320 | > th | dose dependent | rect. | 13 | 8 |
| 244 | 16.48 | wind | 9 | 4320 | > th | dose dependent | rect. | 13 | 17 |
| 259 | 16.50 | temperature | 30 | 10 | < th | dose dependent | sin | 4 | NA |
| 387 | 16.60 | wind | 9 | 4320 | > th | dose independent | rect. | 18 | 22 |
| 391 | 16.60 | wind | 9 | 4320 | > th | dose dependent | rect. | 4 | 12 |
| 405 | 16.61 | wind | 9 | 4320 | > th | dose independent | rect. | 20 | 20 |
| 473 | 16.66 | wind | 9 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 475 | 16.66 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 4 |
| 477 | 16.66 | wind | 9 | 4320 | > th | dose independent | rect. | 13 | 8 |
| 478 | 16.66 | wind | 9 | 4320 | > th | dose independent | rect. | 13 | 17 |
| 544 | 16.69 | wind | 9 | 4320 | > th | dose dependent | sin | 0 | NA |
| 560 | 16.70 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 561 | 16.70 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 563 | 16.70 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 6 |
| 564 | 16.70 | temperature | 20 | 4320 | > th | dose independent | rect. | 17 | 7 |
| 580 | 16.70 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 652 | 16.73 | wind | 9 | 4320 | < th | dose independent | rect. | 18 | 22 |
| 654 | 16.73 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 3 |
| 666 | 16.73 | wind | 9 | 4320 | > th | dose dependent | rect. | 4 | 17 |
| 683 | 16.74 | wind | 9 | 4320 | < th | dose independent | rect. | 20 | 20 |
| 698 | 16.74 | wind | 5 | 4320 | > th | dose dependent | rect. | 20 | 19 |
| 705 | 16.75 | wind | 9 | 4320 | < th | dose independent | rect. | 13 | 8 |
| 706 | 16.75 | wind | 9 | 4320 | < th | dose independent | rect. | 13 | 17 |
| 708 | 16.75 | wind | 9 | 4320 | < th | dose independent | rect. | 13 | 20 |
| 712 | 16.75 | wind | 9 | 4320 | > th | dose dependent | no | NA | NA |
| 817 | 16.77 | wind | 5 | 4320 | > th | dose dependent | rect. | 23 | 16 |
| 832 | 16.78 | wind | 9 | 4320 | < th | dose independent | rect. | 13 | 11 |
| 864 | 16.79 | wind | 9 | 4320 | > th | dose independent | rect. | 4 | 12 |
| 903 | 16.79 | wind | 9 | 4320 | > th | dose dependent | rect. | 15 | 23 |
| 904 | 16.80 | wind | 3 | 720 | > th | dose independent | rect. | 2 | 1 |
| 967 | 16.81 | temperature | 25 | 10 | > th | dose independent | rect. | 4 | 5 |
| 972 | 16.81 | temperature | 25 | 10 | > th | dose independent | rect. | 1 | 8 |