BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0130600 Os02g0130600|AK120974
         (362 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0130600  Conserved hypothetical protein                      575   e-164
Os01g0171800  Conserved hypothetical protein                      289   2e-78

>Os02g0130600 Conserved hypothetical protein
          Length = 362

 Score =  575 bits (1482), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 290/362 (80%), Positives = 290/362 (80%)

Query: 1   MFHGSPXXXXXXXXXXEMRFTTGGSSTRSWEPTVTADTSDLHYWMQWRXXXXXXXXXXXX 60
           MFHGSP          EMRFTTGGSSTRSWEPTVTADTSDLHYWMQWR            
Sbjct: 1   MFHGSPAAVAASAAVAEMRFTTGGSSTRSWEPTVTADTSDLHYWMQWRAAVCALSVLACM 60

Query: 61  XXXXXXXWRHXXXXXXXXXXXXXXXXXXXXXXXXXXVLYDDEAWRPCLRDIHPAWLLGYR 120
                  WRH                          VLYDDEAWRPCLRDIHPAWLLGYR
Sbjct: 61  AVAACLVWRHEGPGAERRPGGASGGGGGSKERRRPGVLYDDEAWRPCLRDIHPAWLLGYR 120

Query: 121 XXXXXXXXXXXXXXXXXDGGTIFYYYTQWTFILVTIYFGLGTALSIYGCSKLADENVVTE 180
                            DGGTIFYYYTQWTFILVTIYFGLGTALSIYGCSKLADENVVTE
Sbjct: 121 LISFFVLLSLLIVIVISDGGTIFYYYTQWTFILVTIYFGLGTALSIYGCSKLADENVVTE 180

Query: 181 RTDMELGSYVAHGAGTKPNLNGEDDTGEIAGFWGYLLQIIYQTNAGAVMLTDCVFWFIIF 240
           RTDMELGSYVAHGAGTKPNLNGEDDTGEIAGFWGYLLQIIYQTNAGAVMLTDCVFWFIIF
Sbjct: 181 RTDMELGSYVAHGAGTKPNLNGEDDTGEIAGFWGYLLQIIYQTNAGAVMLTDCVFWFIIF 240

Query: 241 PFLTVKDYNLNFLLIGMHSVNAVFLLGEAALNSLSFPWFRVAYFFLWTALYVIFQWILHA 300
           PFLTVKDYNLNFLLIGMHSVNAVFLLGEAALNSLSFPWFRVAYFFLWTALYVIFQWILHA
Sbjct: 241 PFLTVKDYNLNFLLIGMHSVNAVFLLGEAALNSLSFPWFRVAYFFLWTALYVIFQWILHA 300

Query: 301 STPLWWPYPFLDVSANLSPLWYFAVAIMQLPCYAVFRLVIKLKHHLLTRWFPGSVVRGSS 360
           STPLWWPYPFLDVSANLSPLWYFAVAIMQLPCYAVFRLVIKLKHHLLTRWFPGSVVRGSS
Sbjct: 301 STPLWWPYPFLDVSANLSPLWYFAVAIMQLPCYAVFRLVIKLKHHLLTRWFPGSVVRGSS 360

Query: 361 TP 362
           TP
Sbjct: 361 TP 362



>Os01g0171800 Conserved hypothetical protein
          Length = 338

 Score =  289 bits (740), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 137/266 (51%), Positives = 180/266 (67%), Gaps = 9/266 (3%)

Query: 97  VLYDDEAWRPCLRDIHPAWLLGYRXXXXXXXXXXXXXXXXXDGGTIFYYYTQWTFILVTI 156
           V+Y ++ W+PCL  IHP WLL +R                 DG ++F YYTQWTF+LVT+
Sbjct: 70  VVYLEDCWKPCLEQIHPGWLLAFRVVSFFILASLLAVDVVVDGWSVFLYYTQWTFLLVTL 129

Query: 157 YFGLGTALSIYGCSKLADENVVTERTDMELGSYVAHGAG--------TKPNLNGEDDTGE 208
           YFGLG+ LSIYGC + + +N    R+  + G+Y+   AG          P  +      E
Sbjct: 130 YFGLGSVLSIYGCYQYSYKNG-DNRSGADHGTYIIAPAGESVYDQSIKNPCYSKMHGGKE 188

Query: 209 IAGFWGYLLQIIYQTNAGAVMLTDCVFWFIIFPFLTVKDYNLNFLLIGMHSVNAVFLLGE 268
           IAGFWGYL QI++QTNAGAVM+TD VFWFI++PFL    Y++NFLLIG HS+N VF++G+
Sbjct: 189 IAGFWGYLFQIMFQTNAGAVMITDLVFWFILYPFLAYNQYDMNFLLIGTHSINVVFMIGD 248

Query: 269 AALNSLSFPWFRVAYFFLWTALYVIFQWILHASTPLWWPYPFLDVSANLSPLWYFAVAIM 328
            A+NSL FPWFR+AYF LWT  +V  QW++HAS  +WWPYPFLD++   +P+WY  VA+M
Sbjct: 249 TAMNSLRFPWFRIAYFLLWTGAFVNVQWLIHASISIWWPYPFLDLAFPKAPVWYLVVAVM 308

Query: 329 QLPCYAVFRLVIKLKHHLLTRWFPGS 354
             PCYA+F LV++LK  LL RWFP S
Sbjct: 309 HFPCYALFALVMRLKQSLLERWFPQS 334



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.327    0.141    0.495 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,596,011
Number of extensions: 372744
Number of successful extensions: 780
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 776
Number of HSP's successfully gapped: 2
Length of query: 362
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 260
Effective length of database: 11,709,973
Effective search space: 3044592980
Effective search space used: 3044592980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 157 (65.1 bits)