BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0122300 Os02g0122300|AK106553
         (231 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0122300  Conserved hypothetical protein                      261   4e-70
Os05g0496100  Conserved hypothetical protein                       65   5e-11

>Os02g0122300 Conserved hypothetical protein
          Length = 231

 Score =  261 bits (666), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 143/231 (61%), Positives = 143/231 (61%)

Query: 1   MEDWDSEDFQPAVPSAKAEPLKSKWAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MEDWDSEDFQPAVPSAKAEPLKSKWA                                  
Sbjct: 1   MEDWDSEDFQPAVPSAKAEPLKSKWADEDVEEDDVKESWEEEEEEKPKPPPVEKTAPKPS 60

Query: 61  XXXXXXXXXXXXXXXXEVVQDEALDDPALEKLRQQRLVEEADFKSTTELFGKKDGSEKSL 120
                           EVVQDEALDDPALEKLRQQRLVEEADFKSTTELFGKKDGSEKSL
Sbjct: 61  GKGAAKKGKQQASTSSEVVQDEALDDPALEKLRQQRLVEEADFKSTTELFGKKDGSEKSL 120

Query: 121 DTFIPKSESDFAEYAELIANKLRPYEKSFHYMGLLKNVMRLSMASLKXXXXXXXXXXXXX 180
           DTFIPKSESDFAEYAELIANKLRPYEKSFHYMGLLKNVMRLSMASLK             
Sbjct: 121 DTFIPKSESDFAEYAELIANKLRPYEKSFHYMGLLKNVMRLSMASLKGADAKDISSSIAA 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXLHIENKDDDFIPGKGNFDDPDEYDFM 231
                                    LHIENKDDDFIPGKGNFDDPDEYDFM
Sbjct: 181 IANEKIKAEKEAAAGKKKQGAKKKQLHIENKDDDFIPGKGNFDDPDEYDFM 231



>Os05g0496100 Conserved hypothetical protein
          Length = 216

 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 49/69 (71%), Gaps = 1/69 (1%)

Query: 99  EEADFKSTTELFGKKDGSEKSLDTFIPKSESDFAEYAELIANKL-RPYEKSFHYMGLLKN 157
           E +   +  E+  K+   ++ ++ F+PKSE +FAEYAE IA  L RPYEKS+HY+GL+K 
Sbjct: 84  ETSTSNAAAEIAQKQPDDDEPIEKFVPKSEKEFAEYAERIAKDLLRPYEKSYHYIGLMKA 143

Query: 158 VMRLSMASL 166
           + +L++ASL
Sbjct: 144 MNKLAVASL 152



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.313    0.132    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,003,044
Number of extensions: 127885
Number of successful extensions: 230
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 228
Number of HSP's successfully gapped: 2
Length of query: 231
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 133
Effective length of database: 11,918,829
Effective search space: 1585204257
Effective search space used: 1585204257
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 154 (63.9 bits)