BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0104200 Os02g0104200|AK060830
         (223 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0104200  Conserved hypothetical protein                      380   e-106
Os06g0106900  Conserved hypothetical protein                      167   5e-42

>Os02g0104200 Conserved hypothetical protein
          Length = 223

 Score =  380 bits (976), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 189/223 (84%), Positives = 189/223 (84%)

Query: 1   MEKAAANXXXXXXXXXXXXXXXDELDRQKQAEKKRRRLEKALANSAAIISXXXXXXXXXX 60
           MEKAAAN               DELDRQKQAEKKRRRLEKALANSAAIIS          
Sbjct: 1   MEKAAANQAGKVLKKGKKKQAKDELDRQKQAEKKRRRLEKALANSAAIISELEKKKQKKR 60

Query: 61  XXXXXXXXXGAAIAEAVALHVLIGEDSDEPCHLMLNKHRRCNHWDHSAGFDFAVDAQGAD 120
                    GAAIAEAVALHVLIGEDSDEPCHLMLNKHRRCNHWDHSAGFDFAVDAQGAD
Sbjct: 61  EEQQRLDEEGAAIAEAVALHVLIGEDSDEPCHLMLNKHRRCNHWDHSAGFDFAVDAQGAD 120

Query: 121 IYPPDGLIQCADHVYAPKGRCIDWGIGQPLPSWGEVKDLQLQAPCYQGMFHQSVACPGFI 180
           IYPPDGLIQCADHVYAPKGRCIDWGIGQPLPSWGEVKDLQLQAPCYQGMFHQSVACPGFI
Sbjct: 121 IYPPDGLIQCADHVYAPKGRCIDWGIGQPLPSWGEVKDLQLQAPCYQGMFHQSVACPGFI 180

Query: 181 AAQAVSSLQIGGDSSDITSPSQGATVVNRMLGATNRLNLYREI 223
           AAQAVSSLQIGGDSSDITSPSQGATVVNRMLGATNRLNLYREI
Sbjct: 181 AAQAVSSLQIGGDSSDITSPSQGATVVNRMLGATNRLNLYREI 223



>Os06g0106900 Conserved hypothetical protein
          Length = 215

 Score =  167 bits (424), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 97/189 (51%), Positives = 107/189 (56%), Gaps = 5/189 (2%)

Query: 1   MEKAAANXXXXXXXXXXXXXXXDELDRQKQAEKKRRRLEKALANSAAIISXXXXXXXXXX 60
           M+KA  N               DELDRQKQAEKKRRRLEKALANSAAIIS          
Sbjct: 1   MDKAGGNQGGKVLKKGKKKHAKDELDRQKQAEKKRRRLEKALANSAAIISELEKKRQQKR 60

Query: 61  XXXXXXXXXGAAIAEAVALHVLIGEDSDEPCHLMLNKHRRCNHWDHSAGFDFAVDAQGAD 120
                    GAAIAEAVALHVLI EDS+EPCHLMLN  R CNHW+   GF FA D+QG D
Sbjct: 61  EEQQRLDDEGAAIAEAVALHVLIDEDSEEPCHLMLNNLRICNHWEDFVGFGFAPDSQGVD 120

Query: 121 IYPPDGLIQCADHVYAPKGRCIDWGIGQPLPSWGEVKDLQLQAPCYQGMFHQSVACPGFI 180
            Y P G      H Y P+ R  +WG+ Q   SW ++ D   +AP YQ    QS   PG I
Sbjct: 121 AY-PSGKPTSVSHAYVPQLRWTNWGMSQTFSSWEQLTD--CEAPLYQEALAQSDIHPGPI 177

Query: 181 AAQAVSSLQ 189
           A   VS LQ
Sbjct: 178 A--IVSPLQ 184



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.133    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,696,391
Number of extensions: 274213
Number of successful extensions: 509
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 506
Number of HSP's successfully gapped: 2
Length of query: 223
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 126
Effective length of database: 11,971,043
Effective search space: 1508351418
Effective search space used: 1508351418
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 154 (63.9 bits)