BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0973400 Os01g0973400|AK068879
(397 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0973400 Conserved hypothetical protein 48 family protein 695 0.0
Os01g0640800 Conserved hypothetical protein 48 family protein 177 1e-44
Os03g0202300 Conserved hypothetical protein 48 family protein 167 2e-41
>Os01g0973400 Conserved hypothetical protein 48 family protein
Length = 397
Score = 695 bits (1794), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/397 (86%), Positives = 344/397 (86%)
Query: 1 MRMAAPQQVHVXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLSEPDLRQLAVDLGQQSYRG 60
MRMAAPQQVHV GLSEPDLRQLAVDLGQQSYRG
Sbjct: 1 MRMAAPQQVHVRAAPLARALRTRVAAAAASASSPERALLGLSEPDLRQLAVDLGQQSYRG 60
Query: 61 KQLHDLLYKSRAKQIQEFSHVPKVFREALVGAGWKVGRSPVHHAVTASDGTTKILLKLED 120
KQLHDLLYKSRAKQIQEFSHVPKVFREALVGAGWKVGRSPVHHAVTASDGTTKILLKLED
Sbjct: 61 KQLHDLLYKSRAKQIQEFSHVPKVFREALVGAGWKVGRSPVHHAVTASDGTTKILLKLED 120
Query: 121 NRLIETVGIPVDDDKGPSRLTACVSSQVGCPLRCSFCATGKGGFARNLHAHEIVEQVLAI 180
NRLIETVGIPVDDDKGPSRLTACVSSQVGCPLRCSFCATGKGGFARNLHAHEIVEQVLAI
Sbjct: 121 NRLIETVGIPVDDDKGPSRLTACVSSQVGCPLRCSFCATGKGGFARNLHAHEIVEQVLAI 180
Query: 181 EETFQHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKELKIGQRMITISTVGVPSTIKKLAS 240
EETFQHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKELKIGQRMITISTVGVPSTIKKLAS
Sbjct: 181 EETFQHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKELKIGQRMITISTVGVPSTIKKLAS 240
Query: 241 HKLQSTLAVSLHAPNQKLRETIVPSAKSYPLEALMDDCKNYFLETGRRVSFEYTLLAGIN 300
HKLQSTLAVSLHAPNQKLRETIVPSAKSYPLEALMDDCKNYFLETGRRVSFEYTLLAGIN
Sbjct: 241 HKLQSTLAVSLHAPNQKLRETIVPSAKSYPLEALMDDCKNYFLETGRRVSFEYTLLAGIN 300
Query: 301 DAKXXXXXXXXXXXTCGGGYHVNLIPYNPIQGSEYKRPYRKVVQAFVDALEARKITVSVR 360
DAK TCGGGYHVNLIPYNPIQGSEYKRPYRKVVQAFVDALEARKITVSVR
Sbjct: 301 DAKEHAEELAELLHTCGGGYHVNLIPYNPIQGSEYKRPYRKVVQAFVDALEARKITVSVR 360
Query: 361 QTRGLDANAACGQLRNEFQKXXXXXXXXXXXXXXVPA 397
QTRGLDANAACGQLRNEFQK VPA
Sbjct: 361 QTRGLDANAACGQLRNEFQKNPLLESSPSSEPNLVPA 397
>Os01g0640800 Conserved hypothetical protein 48 family protein
Length = 405
Score = 177 bits (448), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 125/344 (36%), Positives = 174/344 (50%), Gaps = 18/344 (5%)
Query: 40 GLSEPDLRQLAVDLGQQSYRGKQLHDLLYKSR--AKQIQEFSHVPKVFREALVGAGWKVG 97
G+ P+L G + + L LY + A E + + K FR+ L +
Sbjct: 50 GMDYPELENWVRSQGFRPGQAMMLWKCLYGNNVWAHCYDELAGLNKDFRKMLTDHA-DLK 108
Query: 98 RSPVHHAVTASDGTTKILLKLEDNRLIETVGIPVDDDKGPSRLTACVSSQVGCPLRCSFC 157
V + ASDGT KIL LED +IETV IP R T CVSSQVGC + C FC
Sbjct: 109 ALTVKDILNASDGTRKILFSLEDGSVIETVVIPCTS----GRTTVCVSSQVGCAMNCQFC 164
Query: 158 ATGKGGFARNLHAHEIVEQVLAIEETFQHR---VTNVVFMGMGEPMLNLKSVLEAHRCLN 214
TG+ G ++L EIVEQ + F +TNVVFMGMGEP+ N+ +VL+A +
Sbjct: 165 FTGRMGLRKHLSTAEIVEQAVFARRLFSDEFGSITNVVFMGMGEPLHNIDNVLKASAIMV 224
Query: 215 KE--LKIGQRMITISTVGVPSTIKKLASHKLQSTLAVSLHAPNQKLRETIVPSAKSYPLE 272
E L+ R +T+ST G+ IK+ LAVSL+A ++R I+P + Y L
Sbjct: 225 DEQGLQFSPRKVTVSTSGLVPQIKRFLQES-NCALAVSLNATTDEVRNWIMPINRKYNLS 283
Query: 273 ALMDDCKNYF-LETGRRVSFEYTLLAGINDAKXXXXXXXXXXXTCGGGYHVNLIPYNPIQ 331
L+ + L+ +V FEY +LAG+ND+ G +NLI +NP
Sbjct: 284 LLLGTLREEIRLKKKYKVFFEYVMLAGVNDSVDDAKRLVDLVR--GIPCKINLISFNPHS 341
Query: 332 GSEYK-RPYRKVVQAFVDALEARKITVSVRQTRGLDANAACGQL 374
GS++K P K+++ F + L + V VR +RG D AACGQL
Sbjct: 342 GSQFKPTPDEKIIE-FRNILIQDGLVVFVRLSRGDDQMAACGQL 384
>Os03g0202300 Conserved hypothetical protein 48 family protein
Length = 388
Score = 167 bits (422), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 108/276 (39%), Positives = 152/276 (55%), Gaps = 16/276 (5%)
Query: 111 TTKILLKLEDNRLIETVGIPVD------DDK---GPSRLTACVSSQVGCPLRCSFCATGK 161
TTK+L++L++ +E V + D D K G R T CVSSQVGC + C FCATG
Sbjct: 93 TTKLLIRLKNGESVEAVIMRYDTRLGKYDGKPRPGGVRSTLCVSSQVGCKMGCRFCATGT 152
Query: 162 GGFARNLHAHEIVEQVLAIEETFQHRVTNVVFMGMGEPMLNLKSVLEAHRCL-NKELKIG 220
GF NL + EIVEQ++ Q R NVVFMGMGEP+ N +++EA + L ++
Sbjct: 153 MGFKSNLSSGEIVEQLVHASRYSQIR--NVVFMGMGEPLNNYTALVEAIQVLIGSPFQLS 210
Query: 221 QRMITISTVGVPSTIKKLASHKLQSTLAVSLHAPNQKLRETIVPSAKSYPLEALMDDCKN 280
+ IT+STVG+ +I K + LAVSLHAP+Q +R I+P+A+++PL LM+ ++
Sbjct: 211 PKRITVSTVGIIHSINKFNNDLPNINLAVSLHAPDQDIRCHIMPAARAFPLVKLMNALQS 270
Query: 281 YFLETGRRVSFEYTLLAGINDAKXXXXXXXXXXXTCGGGYHVNLIPYNPIQGS-EYKRPY 339
Y E+ + + EY +L G+ND + VNLIP+NPI S +K
Sbjct: 271 YQNESKQTIFIEYIMLDGVNDQEQHAHQLGKLLEMFKA--VVNLIPFNPIGSSNNFKTSS 328
Query: 340 RKVVQAFVDALEA-RKITVSVRQTRGLDANAACGQL 374
V+ F L I ++RQ G D ACGQL
Sbjct: 329 EHNVKKFQKILRGIYNIRTTIRQQMGQDIAGACGQL 364
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.134 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,998,805
Number of extensions: 418964
Number of successful extensions: 809
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 799
Number of HSP's successfully gapped: 3
Length of query: 397
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 294
Effective length of database: 11,657,759
Effective search space: 3427381146
Effective search space used: 3427381146
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)