Os01g0640800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein 48 family protein.
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Os01g0640800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein 48 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.97 | 0.266 | 11 | 0.5 | 1.19 | 1.13 | 0.576 | 0.577 | -0.225 | 16.7 | 22.72 | 12 | -- | -- |
| 32.27 | 0.265 | 11 | 0.564 | 1.19 | 1.05 | 0.431 | -- | -0.209 | 16.7 | 22.94 | 30 | -- | -- |
| 32.65 | 0.266 | 11 | 0.533 | 1.2 | 1.11 | -- | 0.331 | -0.218 | 16.7 | 22.8 | 58 | -- | -- |
| 32.77 | 0.267 | 11 | 0.57 | 1.2 | 1.04 | -- | -- | -0.207 | 16.7 | 22.93 | 61 | -- | -- |
| 105.89 | 0.482 | 11 | 0.453 | -- | 0.587 | -- | -0.188 | -0.29 | -- | 22.8 | 58 | -- | -- |
| 44.92 | 0.314 | 11.1 | 0.355 | 1.11 | -- | 0.538 | -- | -0.342 | 17.1 | -- | -- | -- | -- |
| 45.65 | 0.316 | 11.1 | 0.356 | 1.12 | -- | -- | -- | -0.34 | 17.1 | -- | -- | -- | -- |
| 99.72 | 0.465 | 11 | 0.579 | -- | 0.864 | -- | -- | -0.169 | -- | 27.69 | 1273 | -- | -- |
| 40.5 | 0.296 | 11 | -- | 1.16 | 0.809 | -- | -- | -0.297 | 16.8 | 22.8 | 12 | -- | -- |
| 110.92 | 0.492 | 11 | 0.316 | -- | -- | -- | -- | -0.368 | -- | -- | -- | -- | -- |
| 48.98 | 0.327 | 11.1 | -- | 1.11 | -- | -- | -- | -0.379 | 17.1 | -- | -- | -- | -- |
| 107.36 | 0.483 | 11 | -- | -- | 0.568 | -- | -- | -0.309 | -- | 31.57 | 1266 | -- | -- |
| 113.55 | 0.497 | 11 | -- | -- | -- | -- | -- | -0.403 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.70 | temperature | 20 | 270 | > th | dose independent | rect. | 16 | 16 |
| 6 | 30.18 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 14 |
| 11 | 30.56 | temperature | 15 | 10 | > th | dose dependent | sin | 9 | NA |
| 31 | 31.44 | temperature | 25 | 10 | < th | dose dependent | sin | 9 | NA |
| 55 | 31.85 | temperature | 25 | 10 | < th | dose dependent | rect. | 22 | 14 |
| 59 | 31.91 | temperature | 20 | 30 | > th | dose independent | sin | 9 | NA |
| 76 | 32.11 | temperature | 25 | 90 | < th | dose dependent | rect. | 22 | 13 |
| 100 | 32.30 | temperature | 25 | 10 | < th | dose dependent | rect. | 20 | 16 |
| 101 | 32.31 | temperature | 25 | 10 | < th | dose dependent | rect. | 18 | 18 |
| 120 | 32.43 | temperature | 25 | 90 | < th | dose dependent | rect. | 19 | 16 |
| 128 | 32.48 | temperature | 30 | 270 | < th | dose dependent | rect. | 20 | 8 |
| 158 | 32.65 | temperature | 15 | 720 | > th | dose dependent | rect. | 18 | 7 |
| 172 | 32.71 | temperature | 25 | 10 | < th | dose dependent | rect. | 16 | 20 |
| 183 | 32.75 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 6 |
| 229 | 32.91 | temperature | 20 | 90 | < th | dose independent | rect. | 22 | 21 |
| 245 | 32.95 | temperature | 20 | 90 | < th | dose independent | rect. | 22 | 17 |
| 260 | 32.98 | temperature | 20 | 90 | < th | dose independent | rect. | 22 | 14 |
| 277 | 33.01 | temperature | 20 | 90 | < th | dose independent | rect. | 22 | 19 |
| 284 | 33.02 | temperature | 20 | 270 | > th | dose independent | rect. | 1 | 22 |
| 302 | 33.04 | temperature | 25 | 10 | < th | dose dependent | rect. | 22 | 22 |
| 379 | 33.19 | temperature | 20 | 90 | > th | dose independent | rect. | 3 | 23 |
| 393 | 33.22 | temperature | 25 | 90 | < th | dose dependent | rect. | 19 | 12 |
| 417 | 33.27 | temperature | 20 | 90 | < th | dose independent | rect. | 19 | 20 |
| 435 | 33.30 | temperature | 20 | 90 | < th | dose independent | rect. | 19 | 17 |
| 439 | 33.30 | temperature | 20 | 90 | < th | dose independent | rect. | 17 | 22 |
| 440 | 33.30 | temperature | 20 | 90 | < th | dose independent | rect. | 19 | 22 |
| 455 | 33.31 | temperature | 25 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 456 | 33.31 | temperature | 25 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 463 | 33.32 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 464 | 33.32 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 2 |
| 479 | 33.33 | temperature | 25 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 491 | 33.34 | temperature | 25 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 493 | 33.35 | temperature | 20 | 90 | < th | dose independent | rect. | 17 | 19 |
| 515 | 33.38 | temperature | 20 | 30 | > th | dose independent | no | NA | NA |
| 518 | 33.38 | temperature | 20 | 90 | < th | dose independent | rect. | 15 | 21 |
| 585 | 33.44 | temperature | 20 | 90 | < th | dose independent | rect. | 5 | 23 |
| 590 | 33.44 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 611 | 33.47 | temperature | 20 | 90 | < th | dose independent | no | NA | NA |
| 619 | 33.47 | temperature | 20 | 30 | > th | dose independent | rect. | 15 | 23 |
| 659 | 33.53 | temperature | 25 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 673 | 33.55 | temperature | 25 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 675 | 33.56 | temperature | 20 | 90 | < th | dose independent | rect. | 7 | 23 |
| 676 | 33.56 | temperature | 20 | 90 | < th | dose independent | rect. | 9 | 23 |
| 690 | 33.59 | temperature | 20 | 30 | < th | dose independent | sin | 8 | NA |
| 708 | 33.61 | temperature | 20 | 90 | < th | dose independent | rect. | 11 | 23 |
| 784 | 33.71 | temperature | 20 | 30 | < th | dose independent | rect. | 1 | 23 |
| 785 | 33.71 | temperature | 20 | 30 | < th | dose independent | rect. | 3 | 23 |