BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0973300 Os01g0973300|AK102519
         (927 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0973300  Adaptin, N-terminal domain containing protein      1908   0.0  
Os03g0355600  Similar to Adapter-related protein complex 2 b...   122   1e-27

>Os01g0973300 Adaptin, N-terminal domain containing protein
          Length = 927

 Score = 1908 bits (4943), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 927/927 (100%), Positives = 927/927 (100%)

Query: 1   HDLLPDETTSLEDTVDVLFSDNSPGVVGATAVAFNSVCPNCLPLISKHFQRLCETLPDIE 60
           HDLLPDETTSLEDTVDVLFSDNSPGVVGATAVAFNSVCPNCLPLISKHFQRLCETLPDIE
Sbjct: 1   HDLLPDETTSLEDTVDVLFSDNSPGVVGATAVAFNSVCPNCLPLISKHFQRLCETLPDIE 60

Query: 61  EWAQILLIDIILRYVIARHGLVKDSSIFASNLTLKSQGSGDSALIGNETCGTTSTITLFR 120
           EWAQILLIDIILRYVIARHGLVKDSSIFASNLTLKSQGSGDSALIGNETCGTTSTITLFR
Sbjct: 61  EWAQILLIDIILRYVIARHGLVKDSSIFASNLTLKSQGSGDSALIGNETCGTTSTITLFR 120

Query: 121 HYIEEYSECLEGDIINCSSVTSSTNNDVALLLKCTSPLLWSRNSGVILAAASVHWIMAPV 180
           HYIEEYSECLEGDIINCSSVTSSTNNDVALLLKCTSPLLWSRNSGVILAAASVHWIMAPV
Sbjct: 121 HYIEEYSECLEGDIINCSSVTSSTNNDVALLLKCTSPLLWSRNSGVILAAASVHWIMAPV 180

Query: 181 DQLNRVVGPILFTLRSSPDATYVMLGNILVFAKTAPQLFAPFYEDFFICTSDPYQTKALK 240
           DQLNRVVGPILFTLRSSPDATYVMLGNILVFAKTAPQLFAPFYEDFFICTSDPYQTKALK
Sbjct: 181 DQLNRVVGPILFTLRSSPDATYVMLGNILVFAKTAPQLFAPFYEDFFICTSDPYQTKALK 240

Query: 241 LEILTTIATESSIPAIFEEFQDYIKEPDRRFVADTVAAIALCAQKLPSITTSCLGGLLAL 300
           LEILTTIATESSIPAIFEEFQDYIKEPDRRFVADTVAAIALCAQKLPSITTSCLGGLLAL
Sbjct: 241 LEILTTIATESSIPAIFEEFQDYIKEPDRRFVADTVAAIALCAQKLPSITTSCLGGLLAL 300

Query: 301 VFYESSISDSANFDGEAAVLVQAILSIKAIVRTDPASHEKVIVRLVHSLDKIKEPAARSL 360
           VFYESSISDSANFDGEAAVLVQAILSIKAIVRTDPASHEKVIVRLVHSLDKIKEPAARSL
Sbjct: 301 VFYESSISDSANFDGEAAVLVQAILSIKAIVRTDPASHEKVIVRLVHSLDKIKEPAARSL 360

Query: 361 IIWIFGEYSSIGNIIPKITPAVLKYLAWSFAAEMLETKLQILNAAAKVIIHSPEEHLEEF 420
           IIWIFGEYSSIGNIIPKITPAVLKYLAWSFAAEMLETKLQILNAAAKVIIHSPEEHLEEF
Sbjct: 361 IIWIFGEYSSIGNIIPKITPAVLKYLAWSFAAEMLETKLQILNAAAKVIIHSPEEHLEEF 420

Query: 421 KKIMAHVIKLATCDLSYDVRDRARFISRLLPYSTTYLNGNNSSCQSHNEDMFKELANHIF 480
           KKIMAHVIKLATCDLSYDVRDRARFISRLLPYSTTYLNGNNSSCQSHNEDMFKELANHIF
Sbjct: 421 KKIMAHVIKLATCDLSYDVRDRARFISRLLPYSTTYLNGNNSSCQSHNEDMFKELANHIF 480

Query: 481 DGKMPSTFHPTNNYRIYLPGSLSQVILHAAPGYAPLPKPQSMELIHKTMEPTRGVGNSSE 540
           DGKMPSTFHPTNNYRIYLPGSLSQVILHAAPGYAPLPKPQSMELIHKTMEPTRGVGNSSE
Sbjct: 481 DGKMPSTFHPTNNYRIYLPGSLSQVILHAAPGYAPLPKPQSMELIHKTMEPTRGVGNSSE 540

Query: 541 SINSDAESGSSTYDGGSVYDSESEVDGSSDRNAADSNTKDNQEDPLVHVYDASVDQGQTA 600
           SINSDAESGSSTYDGGSVYDSESEVDGSSDRNAADSNTKDNQEDPLVHVYDASVDQGQTA
Sbjct: 541 SINSDAESGSSTYDGGSVYDSESEVDGSSDRNAADSNTKDNQEDPLVHVYDASVDQGQTA 600

Query: 601 RDVEDNFASLITTDLTELMSKSALETWLDEAPAEPVQVSTQASSARVSFTNRSFERKPKL 660
           RDVEDNFASLITTDLTELMSKSALETWLDEAPAEPVQVSTQASSARVSFTNRSFERKPKL
Sbjct: 601 RDVEDNFASLITTDLTELMSKSALETWLDEAPAEPVQVSTQASSARVSFTNRSFERKPKL 660

Query: 661 HMLLDPSNSNGLSVLYAFSSEVSPVSRLLVCVDLLFENVSTNQLADITIKSEEASGSEDG 720
           HMLLDPSNSNGLSVLYAFSSEVSPVSRLLVCVDLLFENVSTNQLADITIKSEEASGSEDG
Sbjct: 661 HMLLDPSNSNGLSVLYAFSSEVSPVSRLLVCVDLLFENVSTNQLADITIKSEEASGSEDG 720

Query: 721 LDQTLQGSASVPTIVLDKEIQLLAPEQTEKMVLQVHFHHHLLPLKLSVLCNGKRHPAKLH 780
           LDQTLQGSASVPTIVLDKEIQLLAPEQTEKMVLQVHFHHHLLPLKLSVLCNGKRHPAKLH
Sbjct: 721 LDQTLQGSASVPTIVLDKEIQLLAPEQTEKMVLQVHFHHHLLPLKLSVLCNGKRHPAKLH 780

Query: 781 PDIAYFVRPLPMDLNAFLCKENQLRGMFEYARRCTFKDHLQKLEHNDDSEEHTDKNLLIA 840
           PDIAYFVRPLPMDLNAFLCKENQLRGMFEYARRCTFKDHLQKLEHNDDSEEHTDKNLLIA
Sbjct: 781 PDIAYFVRPLPMDLNAFLCKENQLRGMFEYARRCTFKDHLQKLEHNDDSEEHTDKNLLIA 840

Query: 841 QSLASKILSNANFHLVSMDMPVTFSIEDASGLCWRFSSEILSTSNPCLITILAEGHISEP 900
           QSLASKILSNANFHLVSMDMPVTFSIEDASGLCWRFSSEILSTSNPCLITILAEGHISEP
Sbjct: 841 QSLASKILSNANFHLVSMDMPVTFSIEDASGLCWRFSSEILSTSNPCLITILAEGHISEP 900

Query: 901 LDLTAKVNSEDTAFGLNLLNRVVAIIE 927
           LDLTAKVNSEDTAFGLNLLNRVVAIIE
Sbjct: 901 LDLTAKVNSEDTAFGLNLLNRVVAIIE 927



>Os03g0355600 Similar to Adapter-related protein complex 2 beta 1 subunit
           (Beta-adaptin) (Plasma membrane adaptor HA2/AP2 adaptin
           beta subunit) (Clathrin assembly protein complex 2 beta
           large chain) (AP105B) (Fragment)
          Length = 893

 Score =  122 bits (307), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 98/310 (31%), Positives = 151/310 (48%), Gaps = 29/310 (9%)

Query: 151 LLKCTSPLLWSRNSGVILAAASVHWIMAP-------VDQLNRVVGPILFTLRSS-PDATY 202
           +++  +P L   N  V+L+A  +  +          V  L + + P L TL S+ P+  Y
Sbjct: 238 IVERVTPRLQHANCAVVLSAVKIILLQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQY 297

Query: 203 VMLGNILVFAKTAPQLFAPFYEDFFICTSDPYQTKALKLEILTTIATESSIPAIFEEFQD 262
           V L NI +  +  P + A   + FF   +DP   K  KLEI+  +A++ +I  +  EF++
Sbjct: 298 VALRNINLIVQKRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKE 357

Query: 263 YIKEPDRRFVADTVAAIALCAQKLPSITTSCLGGLLALVFYESSISDSANFDGEAAVLVQ 322
           Y  E D  FV   V AI  CA KL      C+  LL L      I    N+     V+ +
Sbjct: 358 YATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLEL------IKIKVNY-----VVQE 406

Query: 323 AILSIKAIVRTDPASHEKVIVRLVHSLDKIKEPAARSLIIWIFGEYSS-IGNIIPKITPA 381
           AI+ IK I R  P ++E +I  L  SLD + EP A++ +IWI GEY+  I N        
Sbjct: 407 AIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDN-----ADE 461

Query: 382 VLKYLAWSFAAEMLETKLQILNAAAKVIIHSPEEHLEEFKKIMAHVIKLATCDL-SYDVR 440
           +L+    +F  E    +LQ+L A  K+ +  P E  ++   ++  V+  AT +  + D+R
Sbjct: 462 LLESFLETFPEEPALVQLQLLTATVKLFLKKPTEGPQQ---MIQAVLNNATVETDNPDLR 518

Query: 441 DRARFISRLL 450
           DRA    RLL
Sbjct: 519 DRAYIYWRLL 528



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.132    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 30,096,063
Number of extensions: 1261172
Number of successful extensions: 3814
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 3812
Number of HSP's successfully gapped: 2
Length of query: 927
Length of database: 17,035,801
Length adjustment: 110
Effective length of query: 817
Effective length of database: 11,292,261
Effective search space: 9225777237
Effective search space used: 9225777237
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 161 (66.6 bits)