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Os03g0355600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Adapter-related protein complex 2 beta 1 subunit (Beta-adaptin) (Plasma membrane adaptor HA2/AP2 adaptin beta subunit) (Clathrin assembly protein complex 2 beta large chain) (AP105B) (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 10.79 | 0.154 | 12 | 0.834 | 0.513 | 0.366 | 0.126 | -0.717 | 0.266 | 21.9 | 90.21 | 329 | -- | -- |
| 11.58 | 0.158 | 12 | 0.806 | 0.535 | 0.38 | 0.228 | -- | 0.261 | 21.8 | 90.43 | 375 | -- | -- |
| 10.85 | 0.153 | 12 | 0.831 | 0.516 | 0.368 | -- | -0.738 | 0.264 | 21.9 | 90.23 | 340 | -- | -- |
| 11.75 | 0.16 | 12 | 0.793 | 0.526 | 0.344 | -- | -- | 0.257 | 21.9 | 89.38 | 375 | -- | -- |
| 20.74 | 0.212 | 12 | 0.821 | -- | 0.32 | -- | -0.3 | 0.234 | -- | 73.38 | 13 | -- | -- |
| 13.69 | 0.173 | 12 | 0.836 | 0.472 | -- | 0.132 | -- | 0.205 | 22.9 | -- | -- | -- | -- |
| 13.76 | 0.174 | 12 | 0.831 | 0.471 | -- | -- | -- | 0.204 | 22.9 | -- | -- | -- | -- |
| 20.3 | 0.21 | 12 | 0.827 | -- | 0.364 | -- | -- | 0.225 | -- | 63.42 | 2 | -- | -- |
| 27.85 | 0.246 | 12 | -- | 0.577 | 0.465 | -- | -- | 0.192 | 21.5 | 87.23 | 384 | -- | -- |
| 27.53 | 0.245 | 12 | 0.841 | -- | -- | -- | -- | 0.208 | -- | -- | -- | -- | -- |
| 31.95 | 0.264 | 12 | -- | 0.478 | -- | -- | -- | 0.112 | 23.1 | -- | -- | -- | -- |
| 38.32 | 0.288 | 12 | -- | -- | 0.381 | -- | -- | 0.133 | -- | 63 | 2 | -- | -- |
| 46.19 | 0.317 | 12 | -- | -- | -- | -- | -- | 0.114 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 10.22 | radiation | 10 | 1440 | < th | dose dependent | rect. | 10 | 7 |
| 2 | 10.28 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 4 |
| 7 | 10.43 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 4 |
| 11 | 10.44 | radiation | 10 | 1440 | < th | dose dependent | rect. | 10 | 10 |
| 24 | 10.47 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 9 |
| 27 | 10.48 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 9 |
| 59 | 10.58 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 4 |
| 60 | 10.58 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 4 |
| 91 | 10.63 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 98 | 10.67 | radiation | 1 | 1440 | > th | dose independent | rect. | 15 | 1 |
| 99 | 10.67 | radiation | 1 | 1440 | < th | dose independent | rect. | 15 | 1 |
| 100 | 10.67 | radiation | 10 | 1440 | < th | dose dependent | sin | 18 | NA |
| 106 | 10.69 | humidity | 90 | 270 | > th | dose dependent | rect. | 4 | 22 |
| 117 | 10.71 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 13 |
| 126 | 10.71 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 21 |
| 141 | 10.72 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 21 |
| 287 | 10.85 | radiation | 1 | 1440 | < th | dose independent | sin | 19 | NA |
| 315 | 10.86 | radiation | 1 | 1440 | > th | dose independent | sin | 19 | NA |
| 406 | 10.91 | humidity | 90 | 270 | > th | dose dependent | rect. | 21 | 22 |
| 410 | 10.92 | humidity | 90 | 270 | > th | dose dependent | no | NA | NA |
| 411 | 10.92 | humidity | 90 | 270 | > th | dose dependent | rect. | 16 | 20 |
| 434 | 10.94 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 458 | 10.97 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 6 |
| 469 | 10.98 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 472 | 10.98 | humidity | 90 | 270 | > th | dose dependent | rect. | 20 | 16 |
| 488 | 10.99 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 493 | 10.99 | humidity | 90 | 720 | > th | dose dependent | rect. | 7 | 18 |
| 514 | 11.00 | humidity | 90 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 515 | 11.01 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 544 | 11.03 | humidity | 80 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 631 | 11.06 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 654 | 11.06 | humidity | 90 | 270 | > th | dose dependent | rect. | 7 | 23 |
| 674 | 11.09 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 2 |
| 678 | 11.09 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 2 |
| 699 | 11.10 | temperature | 15 | 10 | > th | dose dependent | sin | 0 | NA |
| 795 | 11.16 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 4 |
| 832 | 11.19 | humidity | 90 | 270 | > th | dose dependent | sin | 4 | NA |
| 904 | 11.23 | humidity | 90 | 270 | > th | dose independent | rect. | 21 | 21 |
| 982 | 11.27 | humidity | 80 | 1440 | > th | dose independent | sin | 22 | NA |
| 993 | 11.27 | humidity | 90 | 270 | > th | dose independent | rect. | 1 | 23 |
