BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0971700 Os01g0971700|AK105975
         (268 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0971700  Streptomyces cyclase/dehydrase family protein       404   e-113
Os03g0837900  Streptomyces cyclase/dehydrase family protein        68   9e-12

>Os01g0971700 Streptomyces cyclase/dehydrase family protein
          Length = 268

 Score =  404 bits (1037), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 202/237 (85%), Positives = 202/237 (85%)

Query: 32  IPHARLRLAVTTXXXXXXXXXXXXXXXXDVAHDEDEQEGQHHKEERDERYGFEIQVRKLP 91
           IPHARLRLAVTT                DVAHDEDEQEGQHHKEERDERYGFEIQVRKLP
Sbjct: 32  IPHARLRLAVTTPSRLPSPISSSPDPPPDVAHDEDEQEGQHHKEERDERYGFEIQVRKLP 91

Query: 92  KXXXXXXXXXXXXXXXXXXXWATLTDYEGLAGFIPGLSECRLLDQSDCFARLYQVGEQDL 151
           K                   WATLTDYEGLAGFIPGLSECRLLDQSDCFARLYQVGEQDL
Sbjct: 92  KRNRRLVRARVRVDAPLDAVWATLTDYEGLAGFIPGLSECRLLDQSDCFARLYQVGEQDL 151

Query: 152 ALGFKFNARGTIDCYEGELQLLPAGARRREIAFNMIDGDFKVFEGNWSVQEEVDGGEISA 211
           ALGFKFNARGTIDCYEGELQLLPAGARRREIAFNMIDGDFKVFEGNWSVQEEVDGGEISA
Sbjct: 152 ALGFKFNARGTIDCYEGELQLLPAGARRREIAFNMIDGDFKVFEGNWSVQEEVDGGEISA 211

Query: 212 DQEFQTILSYVVELEPKLWVPVRLLEGRICNEIKTNLFSIREEAQRIQRLQDKRNPC 268
           DQEFQTILSYVVELEPKLWVPVRLLEGRICNEIKTNLFSIREEAQRIQRLQDKRNPC
Sbjct: 212 DQEFQTILSYVVELEPKLWVPVRLLEGRICNEIKTNLFSIREEAQRIQRLQDKRNPC 268



>Os03g0837900 Streptomyces cyclase/dehydrase family protein
          Length = 722

 Score = 67.8 bits (164), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 51/148 (34%), Positives = 71/148 (47%), Gaps = 15/148 (10%)

Query: 112 WATLTDYEGLAGFIPGLSEC-RLLDQSDCFARLYQVGEQDLALGFKFNARGTIDCYEGEL 170
           W  +TDYE LA FIP L    R+         L Q G Q  AL +   AR  +D     L
Sbjct: 115 WRVITDYERLAEFIPNLVHSGRIPCPHQGRVWLEQRGLQQ-ALYWHIEARVVLD-----L 168

Query: 171 QLLPAGARRREIAFNMIDGDFKVFEGNWSVQEEVDGGEISADQEFQTILSYVVELEPKLW 230
           + +P     RE+ F+M+DGDFK FEG WS++        S  +    IL Y V + P+  
Sbjct: 169 KEVPDAVNGRELHFSMVDGDFKKFEGKWSIR--------SGPRSSSAILLYEVNVIPRFN 220

Query: 231 VPVRLLEGRICNEIKTNLFSIREEAQRI 258
            P   LE  I +++  NL ++   A+ I
Sbjct: 221 FPAIFLERIIRSDLPVNLGALACRAENI 248



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.139    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,897,303
Number of extensions: 265188
Number of successful extensions: 666
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 664
Number of HSP's successfully gapped: 2
Length of query: 268
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 169
Effective length of database: 11,866,615
Effective search space: 2005457935
Effective search space used: 2005457935
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)