Os01g0971700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Streptomyces cyclase/dehydrase family protein.
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Os01g0971700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Streptomyces cyclase/dehydrase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.59 | 0.284 | 10.3 | -1.11 | 0.538 | 1.29 | -0.385 | 0.0587 | -0.278 | 21.8 | 25.16 | 11 | -- | -- |
| 36.59 | 0.282 | 10.3 | -1.11 | 0.536 | 1.29 | -0.369 | -- | -0.273 | 21.8 | 25.23 | 10 | -- | -- |
| 37.06 | 0.284 | 10.3 | -1.06 | 0.541 | 1.29 | -- | -0.179 | -0.266 | 21.7 | 25.28 | 11 | -- | -- |
| 37.1 | 0.284 | 10.3 | -1.09 | 0.54 | 1.29 | -- | -- | -0.27 | 21.7 | 25.27 | 10 | -- | -- |
| 53.17 | 0.341 | 10.3 | -1.03 | -- | 1.53 | -- | -0.0204 | -0.225 | -- | 25.21 | 10 | -- | -- |
| 61.39 | 0.367 | 10.4 | -1.41 | 0.724 | -- | -0.415 | -- | -0.534 | 22.9 | -- | -- | -- | -- |
| 62.12 | 0.369 | 10.4 | -1.39 | 0.726 | -- | -- | -- | -0.533 | 22.9 | -- | -- | -- | -- |
| 53.15 | 0.341 | 10.3 | -1.03 | -- | 1.52 | -- | -- | -0.222 | -- | 25.37 | 6 | -- | -- |
| 65.39 | 0.377 | 10.2 | -- | 0.508 | 1.7 | -- | -- | -0.077 | 21.1 | 25.14 | 25 | -- | -- |
| 94.83 | 0.455 | 10.3 | -1.38 | -- | -- | -- | -- | -0.528 | -- | -- | -- | -- | -- |
| 113.08 | 0.497 | 10.3 | -- | 0.715 | -- | -- | -- | -0.378 | 22.8 | -- | -- | -- | -- |
| 79.19 | 0.416 | 10.2 | -- | -- | 1.87 | -- | -- | -0.0646 | -- | 25.01 | 3 | -- | -- |
| 144.7 | 0.561 | 10.3 | -- | -- | -- | -- | -- | -0.375 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.84 | temperature | 25 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 3 | 36.16 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 5 | 36.45 | temperature | 25 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 6 | 36.53 | temperature | 25 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 8 | 36.55 | temperature | 25 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 9 | 36.58 | temperature | 25 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 10 | 36.61 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 11 | 36.61 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 12 | 36.62 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 13 | 36.63 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 16 | 36.67 | temperature | 25 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 17 | 36.67 | temperature | 25 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 18 | 36.67 | temperature | 25 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 23 | 36.72 | temperature | 25 | 30 | < th | dose dependent | sin | 7 | NA |
| 33 | 36.84 | temperature | 25 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 34 | 36.85 | temperature | 25 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 65 | 37.32 | temperature | 15 | 10 | > th | dose dependent | sin | 8 | NA |
| 80 | 37.57 | temperature | 15 | 90 | > th | dose dependent | sin | 9 | NA |
| 337 | 40.14 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 18 |
| 361 | 40.34 | temperature | 25 | 90 | < th | dose dependent | rect. | 19 | 14 |
| 400 | 40.65 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 15 |
| 419 | 40.75 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 4 |
| 525 | 41.49 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 12 |
| 594 | 41.85 | temperature | 20 | 720 | > th | dose dependent | rect. | 16 | 9 |
| 609 | 41.91 | temperature | 25 | 720 | < th | dose dependent | rect. | 10 | 15 |
| 610 | 41.91 | temperature | 15 | 270 | > th | dose dependent | rect. | 15 | 20 |
| 612 | 41.92 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 10 |
| 643 | 42.03 | temperature | 25 | 720 | < th | dose dependent | sin | 18 | NA |
| 675 | 42.17 | temperature | 25 | 270 | < th | dose dependent | rect. | 21 | 9 |
| 683 | 42.22 | temperature | 20 | 720 | > th | dose dependent | sin | 15 | NA |
| 691 | 42.25 | temperature | 20 | 10 | > th | dose independent | rect. | 17 | 19 |
| 756 | 42.48 | temperature | 20 | 90 | > th | dose independent | rect. | 15 | 23 |
| 767 | 42.52 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 10 |
| 875 | 42.91 | temperature | 25 | 720 | < th | dose independent | rect. | 18 | 4 |
| 878 | 42.93 | temperature | 25 | 720 | < th | dose independent | rect. | 16 | 6 |
| 923 | 43.05 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 19 |
| 983 | 43.25 | temperature | 20 | 10 | > th | dose independent | rect. | 17 | 21 |