BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0971700 Os01g0971700|AK105975
(268 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G01650.1 | chr4:704578-705866 REVERSE LENGTH=289 170 7e-43
AT5G08720.1 | chr5:2841536-2845335 REVERSE LENGTH=720 71 5e-13
>AT4G01650.1 | chr4:704578-705866 REVERSE LENGTH=289
Length = 288
Score = 170 bits (431), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 80/153 (52%), Positives = 116/153 (75%), Gaps = 9/153 (5%)
Query: 112 WATLTDYEGLAGFIPGLSECRLLDQSDCFARLYQVGEQDLALGFKFNARGTIDCYEGELQ 171
W+ LTDYE L+ FIPGL L+++ RL+Q+G+Q+LALG KFNA+ +DCYE EL+
Sbjct: 131 WSVLTDYEKLSDFIPGLVVSELVEKEGNRVRLFQMGQQNLALGLKFNAKAVLDCYEKELE 190
Query: 172 LLPAGARRREIAFNMIDGDFKVFEGNWSVQEEVDGGEISAD------QEFQTILSYVVEL 225
+LP G RRREI F M++GDF++FEG WS+ E++D G I + ++F+T L+Y V++
Sbjct: 191 VLPHG-RRREIDFKMVEGDFQLFEGKWSI-EQLDKG-IHGEALDLQFKDFRTTLAYTVDV 247
Query: 226 EPKLWVPVRLLEGRICNEIKTNLFSIREEAQRI 258
+PK+W+PVRL+EGR+C EI+TNL SIR+ AQ++
Sbjct: 248 KPKMWLPVRLVEGRLCKEIRTNLMSIRDAAQKV 280
>AT5G08720.1 | chr5:2841536-2845335 REVERSE LENGTH=720
Length = 719
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 76/150 (50%), Gaps = 15/150 (10%)
Query: 112 WATLTDYEGLAGFIPGLS-ECRLLDQSDCFARLYQVGEQDLALGFKFNARGTIDCYEGEL 170
W LTDYE LA FIP L R+ L Q G Q AL + AR +D +E
Sbjct: 113 WNVLTDYERLADFIPNLVWSGRIPCPHPGRIWLEQRGLQR-ALYWHIEARVVLDLHECLD 171
Query: 171 QLLPAGARRREIAFNMIDGDFKVFEGNWSVQEEVDGGEISADQEFQTILSYVVELEPKLW 230
P G RE+ F+M+DGDFK FEG WSV+ S + T+LSY V + P+
Sbjct: 172 S--PNG---RELHFSMVDGDFKKFEGKWSVK--------SGIRSVGTVLSYEVNVIPRFN 218
Query: 231 VPVRLLEGRICNEIKTNLFSIREEAQRIQR 260
P LE I +++ NL ++ +A++I +
Sbjct: 219 FPAIFLERIIRSDLPVNLRAVARQAEKIYK 248
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 66/144 (45%), Gaps = 21/144 (14%)
Query: 112 WATLTDYEGLAGFIPGLSECRLLDQSDCFARLYQVGEQDLALGFKFNARGTIDCYEGELQ 171
W LT YE L +P L+ ++L + + R+ Q G + L L +AR +D +E
Sbjct: 351 WKVLTSYESLPEIVPNLAISKILSRDNNKVRILQEGCKGL-LYMVLHARAVLDLHE---- 405
Query: 172 LLPAGARRREIAFNMIDGDFKVFEGNWSVQEEVDGGEISADQEFQTILSYVVE--LEPKL 229
R +EI F ++GDF EG W ++ T+L Y VE +
Sbjct: 406 -----IREQEIRFEQVEGDFDSLEGKWIFEQL---------GSHHTLLKYTVESKMRKDS 451
Query: 230 WVPVRLLEGRICNEIKTNLFSIRE 253
++ ++E I ++ +NL +IR+
Sbjct: 452 FLSEAIMEEVIYEDLPSNLCAIRD 475
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.139 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,465,703
Number of extensions: 170511
Number of successful extensions: 487
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 483
Number of HSP's successfully gapped: 3
Length of query: 268
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 171
Effective length of database: 8,447,217
Effective search space: 1444474107
Effective search space used: 1444474107
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)