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Os03g0837900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Streptomyces cyclase/dehydrase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.4 (0.026) R2 : 0.907
β1 : -0.886 (0.0951) R2dD : 0.0184 R2D : 0.00643
β2 : 2.49 (0.0675) R2dC : 0.281 R2C : 0.279
β3 : 2.88 (0.0544) R2dE : 0.572 R2E : 0.586
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.716 (0.0555) R2dN8 : 0.0454 R2N8 : 0.0189
σ : 0.486
deviance : 108.81
__
_____
C
peak time of C : 6.88
E
wheather : radiation
threshold : 1.88
memory length : 92
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 17.2
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
107.37 0.487 10.4 -0.887 2.5 2.9 0.428 -0.495 -0.712 6.86 1.88 94 17.2 --
108.55 0.485 10.4 -0.887 2.49 2.89 0.325 -- -0.721 6.86 1.87 92 17.3 --
107.84 0.484 10.4 -0.887 2.5 2.9 -- -0.495 -0.712 6.86 1.88 94 17.2 --
108.81 0.486 10.4 -0.886 2.49 2.88 -- -- -0.716 6.88 1.88 92 17.2 --
174.32 0.615 10.5 -0.835 -- 3.92 -- -0.122 -0.656 -- -29.24 14 19.8 --
174.32 0.619 10.4 -0.837 3.94 -- -0.128 -- -0.654 10.4 -- -- -- --
174.38 0.618 10.4 -0.842 3.94 -- -- -- -0.655 10.4 -- -- -- --
174.38 0.615 10.5 -0.842 -- 3.92 -- -- -0.655 -- -28.95 15 19.8 --
129.28 0.53 10.4 -- 2.43 2.79 -- -- -0.618 7.11 2.23 90 17.3 --
1122.04 1.57 10.5 -0.905 -- -- -- -- -0.667 -- -- -- -- --
193.07 0.65 10.3 -- 3.94 -- -- -- -0.561 10.4 -- -- -- --
193.07 0.647 10.4 -- -- 3.93 -- -- -0.561 -- -31.5 17 19.8 --
1143.66 1.58 10.4 -- -- -- -- -- -0.567 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 106.83 radiation 10.0 10 < th dose dependent rect. 5 17
2 107.75 radiation 10.0 90 < th dose dependent rect. 5 16
8 112.03 radiation 30.0 90 < th dose dependent rect. 16 17
9 112.06 radiation 10.0 90 < th dose dependent sin 23 NA
10 112.18 radiation 1.0 90 > th dose independent sin 23 NA
11 112.30 radiation 30.0 270 < th dose independent rect. 15 4
13 112.40 radiation 40.0 270 < th dose dependent rect. 15 4
15 112.63 radiation 10.0 10 < th dose dependent sin 22 NA
17 113.00 precipitation 0.1 270 < th dose independent rect. 19 20
18 113.00 precipitation 0.1 270 < th dose dependent rect. 19 20
20 113.14 radiation 1.0 90 < th dose independent rect. 5 16
26 113.58 radiation 1.0 90 < th dose independent sin 23 NA
33 113.90 temperature 20.0 270 > th dose independent rect. 15 5
35 114.01 radiation 40.0 270 < th dose independent rect. 14 6
40 114.61 radiation 1.0 270 > th dose independent rect. 6 9
43 114.76 atmosphere 995.0 270 > th dose independent rect. 15 5
64 115.48 radiation 30.0 270 < th dose independent rect. 15 15
66 115.58 radiation 10.0 270 < th dose dependent rect. 2 17
67 115.62 radiation 1.0 270 > th dose independent rect. 4 11
79 115.68 atmosphere 1015.0 270 < th dose independent rect. 15 5
80 115.68 temperature 10.0 270 > th dose independent rect. 20 19
84 115.87 wind 9.0 270 < th dose independent rect. 20 19
91 115.89 radiation 20.0 10 < th dose dependent rect. 16 6
104 116.31 wind 1.0 270 > th dose independent rect. 15 5
111 116.46 atmosphere 995.0 10 > th dose independent rect. 16 6
121 116.73 radiation 10.0 10 < th dose dependent rect. 10 12
128 116.88 atmosphere 995.0 270 > th dose independent rect. 20 18
144 117.10 radiation 20.0 10 < th dose dependent rect. 16 18
158 117.30 wind 9.0 270 < th dose independent rect. 15 5
174 117.67 humidity 50.0 90 > th dose independent rect. 16 5
196 118.04 wind 7.0 270 < th dose independent rect. 19 8
200 118.09 precipitation 0.1 10 < th dose independent rect. 22 18
202 118.09 precipitation 0.1 10 < th dose dependent rect. 22 18
216 118.32 wind 7.0 270 < th dose independent rect. 20 6
217 118.35 humidity 50.0 10 > th dose independent rect. 16 6
222 118.39 radiation 30.0 10 < th dose independent rect. 16 6
225 118.48 temperature 10.0 10 > th dose independent rect. 16 6
227 118.48 atmosphere 1010.0 10 < th dose independent rect. 16 6
230 118.48 temperature 10.0 10 > th dose independent rect. 22 18
233 118.51 radiation 10.0 10 < th dose independent rect. 16 6
234 118.54 precipitation 0.1 270 < th dose independent rect. 15 4
235 118.54 precipitation 0.1 270 < th dose dependent rect. 15 4
252 118.79 wind 1.0 10 > th dose independent rect. 16 6
253 118.79 wind 1.0 90 > th dose independent rect. 4 17
254 118.84 precipitation 0.1 270 < th dose independent rect. 6 9
256 118.84 precipitation 0.1 270 < th dose dependent rect. 6 9
258 118.88 atmosphere 995.0 270 > th dose independent rect. 2 18
260 118.94 temperature 10.0 270 > th dose independent rect. 6 9
261 118.94 atmosphere 1015.0 270 < th dose independent rect. 6 9
262 118.94 temperature 10.0 270 > th dose independent rect. 15 15
263 118.94 humidity 50.0 270 > th dose independent rect. 20 19
268 119.00 wind 1.0 270 > th dose dependent rect. 15 5
277 119.15 wind 1.0 270 > th dose dependent rect. 16 3
282 119.20 atmosphere 995.0 270 > th dose independent rect. 15 15
297 119.38 radiation 30.0 90 < th dose dependent rect. 13 8
302 119.44 precipitation 0.1 10 < th dose independent rect. 16 6
303 119.44 precipitation 0.1 10 < th dose dependent rect. 16 6
305 119.52 wind 9.0 10 < th dose independent rect. 22 18
333 119.73 precipitation 0.1 270 < th dose independent rect. 19 8
334 119.73 precipitation 0.1 270 < th dose dependent rect. 19 8
337 119.77 wind 9.0 270 < th dose independent rect. 6 9
338 119.79 temperature 10.0 270 > th dose independent rect. 20 6
339 119.79 temperature 30.0 270 < th dose independent rect. 20 6
340 119.79 humidity 50.0 270 > th dose independent rect. 20 6
343 119.79 atmosphere 995.0 270 > th dose independent rect. 20 6
344 119.79 radiation 1.0 270 < th dose independent rect. 20 6
349 119.79 temperature 10.0 270 > th dose independent rect. 2 18
350 119.79 atmosphere 1015.0 270 < th dose independent rect. 2 18
351 119.79 radiation 1.0 270 < th dose dependent rect. 20 6
357 119.83 radiation 10.0 10 < th dose independent rect. 12 10
378 119.99 atmosphere 995.0 10 > th dose independent rect. 22 18
383 120.03 temperature 10.0 270 > th dose independent rect. 19 8
384 120.03 temperature 30.0 270 < th dose independent rect. 19 8
385 120.03 humidity 50.0 270 > th dose independent rect. 19 8
386 120.03 atmosphere 995.0 270 > th dose independent rect. 19 8
387 120.03 radiation 1.0 270 < th dose independent rect. 19 8
392 120.03 temperature 10.0 270 > th dose independent rect. 3 16
393 120.03 atmosphere 995.0 270 > th dose independent rect. 3 16
394 120.03 atmosphere 1015.0 270 < th dose independent rect. 3 16
395 120.03 radiation 1.0 270 < th dose dependent rect. 19 8
404 120.12 precipitation 0.1 270 < th dose independent rect. 20 6
405 120.12 precipitation 0.1 270 < th dose dependent rect. 20 6
412 120.20 wind 9.0 10 < th dose independent rect. 16 6
413 120.20 radiation 10.0 10 < th dose independent rect. 7 15
448 120.43 radiation 10.0 90 < th dose dependent rect. 9 12
480 120.82 wind 1.0 270 > th dose independent rect. 20 6
487 120.89 temperature 10.0 1440 > th dose independent rect. 17 6
490 120.89 radiation 30.0 1440 < th dose independent rect. 17 6
496 120.89 temperature 10.0 1440 > th dose independent rect. 23 18
503 120.93 humidity 50.0 270 > th dose independent rect. 14 6
533 121.24 atmosphere 995.0 270 > th dose independent rect. 6 9
556 121.31 radiation 10.0 10 < th dose independent rect. 10 12
557 121.31 precipitation 0.1 270 < th dose independent rect. 10 15
559 121.31 precipitation 0.1 270 < th dose dependent rect. 10 15
561 121.39 wind 9.0 270 < th dose independent rect. 2 18
571 121.46 atmosphere 995.0 10 > th dose dependent rect. 16 6
604 121.75 wind 9.0 270 < th dose independent rect. 15 15
625 121.83 radiation 10.0 270 < th dose independent rect. 1 18
638 121.86 atmosphere 995.0 90 > th dose dependent rect. 16 5
688 122.10 wind 9.0 270 < th dose independent rect. 10 15
694 122.19 wind 9.0 270 < th dose independent rect. 3 16
721 122.41 radiation 10.0 90 < th dose independent rect. 13 8
814 123.37 humidity 50.0 270 > th dose independent rect. 1 9
816 123.37 wind 9.0 270 < th dose dependent rect. 20 5
824 123.41 wind 1.0 10 > th dose independent rect. 4 18
825 123.42 temperature 10.0 270 > th dose independent rect. 1 9
826 123.42 atmosphere 995.0 270 > th dose independent rect. 1 9
827 123.42 atmosphere 1015.0 270 < th dose independent rect. 1 9
828 123.42 temperature 10.0 270 > th dose independent rect. 10 15
835 123.47 wind 9.0 270 < th dose independent rect. 1 9
837 123.47 atmosphere 1015.0 10 < th dose independent rect. 22 18
872 123.72 temperature 30.0 90 < th dose independent rect. 16 5
902 123.98 humidity 90.0 270 < th dose independent rect. 15 4
921 124.09 wind 9.0 270 < th dose dependent rect. 19 7
930 124.13 radiation 40.0 270 < th dose independent rect. 1 19
953 124.29 atmosphere 1015.0 270 < th dose independent rect. 20 19