BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0837900 Os03g0837900|AK068346
         (722 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0837900  Streptomyces cyclase/dehydrase family protein      1238   0.0  

>Os03g0837900 Streptomyces cyclase/dehydrase family protein
          Length = 722

 Score = 1238 bits (3204), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 616/722 (85%), Positives = 616/722 (85%)

Query: 1   MTSRVLVXXXXXXXXXXXXXFLPRIPNPCANPSHRGAPPCGAALWRHHSGRXXXXXXXXX 60
           MTSRVLV             FLPRIPNPCANPSHRGAPPCGAALWRHHSGR         
Sbjct: 1   MTSRVLVSSSSSSSSAAAAAFLPRIPNPCANPSHRGAPPCGAALWRHHSGRAVTTAAAAA 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXVQCDVDVVSWXXXXXXXXXXXXXXXXXXXXXITD 120
                                     VQCDVDVVSW                     ITD
Sbjct: 61  ATGDHWGAEYHGGGGGRGGKSAAGPGVQCDVDVVSWRERRVFASVAVAADVDTVWRVITD 120

Query: 121 YERLAEFIPNLVHSGRIPCPHQGRVWLEQRGLQQALYWHIEARVVLDLKEVPDAVNGREL 180
           YERLAEFIPNLVHSGRIPCPHQGRVWLEQRGLQQALYWHIEARVVLDLKEVPDAVNGREL
Sbjct: 121 YERLAEFIPNLVHSGRIPCPHQGRVWLEQRGLQQALYWHIEARVVLDLKEVPDAVNGREL 180

Query: 181 HFSMVDGDFKKFEGKWSIRSGPRSSSAILLYEVNVIPRFNFPAIFLERIIRSDLPVNLGA 240
           HFSMVDGDFKKFEGKWSIRSGPRSSSAILLYEVNVIPRFNFPAIFLERIIRSDLPVNLGA
Sbjct: 181 HFSMVDGDFKKFEGKWSIRSGPRSSSAILLYEVNVIPRFNFPAIFLERIIRSDLPVNLGA 240

Query: 241 LACRAENIYLGNQRHGTAKFSGAGSRFHNFRNATTENDAIAPSKFKETPPSGLGGVLASP 300
           LACRAENIYLGNQRHGTAKFSGAGSRFHNFRNATTENDAIAPSKFKETPPSGLGGVLASP
Sbjct: 241 LACRAENIYLGNQRHGTAKFSGAGSRFHNFRNATTENDAIAPSKFKETPPSGLGGVLASP 300

Query: 301 PSELNSKWGVYGNVCRLDRPCVVDEIHLRRFDGLLEHEGAHRFVFASITVKAPVREVWNI 360
           PSELNSKWGVYGNVCRLDRPCVVDEIHLRRFDGLLEHEGAHRFVFASITVKAPVREVWNI
Sbjct: 301 PSELNSKWGVYGNVCRLDRPCVVDEIHLRRFDGLLEHEGAHRFVFASITVKAPVREVWNI 360

Query: 361 LTAYEKLPEFVPNLAISRIIRRDNNKVRILQEGCKGLLYMVLHARVVMDLREKLEREISF 420
           LTAYEKLPEFVPNLAISRIIRRDNNKVRILQEGCKGLLYMVLHARVVMDLREKLEREISF
Sbjct: 361 LTAYEKLPEFVPNLAISRIIRRDNNKVRILQEGCKGLLYMVLHARVVMDLREKLEREISF 420

Query: 421 EQVEGDFYSFKGKWRLEQLGDQHTLLKYMVETKMHKDTFLSESILEEVIYEDLPSNLCAI 480
           EQVEGDFYSFKGKWRLEQLGDQHTLLKYMVETKMHKDTFLSESILEEVIYEDLPSNLCAI
Sbjct: 421 EQVEGDFYSFKGKWRLEQLGDQHTLLKYMVETKMHKDTFLSESILEEVIYEDLPSNLCAI 480

Query: 481 RDYIEKAEAESGNSTSSSIVASNADTIAIDYAEGRQXXXXXXXXXXXPVKQRPKVPGLQK 540
           RDYIEKAEAESGNSTSSSIVASNADTIAIDYAEGRQ           PVKQRPKVPGLQK
Sbjct: 481 RDYIEKAEAESGNSTSSSIVASNADTIAIDYAEGRQSEQASTSCSSSPVKQRPKVPGLQK 540

Query: 541 DIEVLKSELEKFIAKYGQDGFMPKRKHLRLHGRVDIEKAITRMGGFRKIASIMNLSLSYK 600
           DIEVLKSELEKFIAKYGQDGFMPKRKHLRLHGRVDIEKAITRMGGFRKIASIMNLSLSYK
Sbjct: 541 DIEVLKSELEKFIAKYGQDGFMPKRKHLRLHGRVDIEKAITRMGGFRKIASIMNLSLSYK 600

Query: 601 NRKPRGYWDNLENLQEEIRRFQKNWGMDPAYMPSRKSFERAGRYDIARALEKWGGVHEVS 660
           NRKPRGYWDNLENLQEEIRRFQKNWGMDPAYMPSRKSFERAGRYDIARALEKWGGVHEVS
Sbjct: 601 NRKPRGYWDNLENLQEEIRRFQKNWGMDPAYMPSRKSFERAGRYDIARALEKWGGVHEVS 660

Query: 661 XXXXXXXXXXXXXANSDDESKAGSSYAITNKHASKPNKPSVSPXXXXXXXXXXXXXANWI 720
                        ANSDDESKAGSSYAITNKHASKPNKPSVSP             ANWI
Sbjct: 661 RLLSLELRRPRRRANSDDESKAGSSYAITNKHASKPNKPSVSPDKQKWLLKLKDLDANWI 720

Query: 721 EY 722
           EY
Sbjct: 721 EY 722



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.136    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 22,163,794
Number of extensions: 906696
Number of successful extensions: 2027
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 2017
Number of HSP's successfully gapped: 2
Length of query: 722
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 614
Effective length of database: 11,396,689
Effective search space: 6997567046
Effective search space used: 6997567046
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 160 (66.2 bits)