BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0970400 Os01g0970400|AK069207
(227 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0970400 Eukaryotic translation initiation factor 4E-1 ... 369 e-103
Os10g0467600 cap-binding protein p28 [Oryza sativa (japonic... 205 2e-53
AK109012 127 9e-30
Os03g0262400 Similar to Eukaryotic translation initiation f... 109 2e-24
>Os01g0970400 Eukaryotic translation initiation factor 4E-1 (eIF4E-1) (eIF-4E-1)
(mRNA cap-binding protein) (eIF-4F 25 kDa subunit)
(eIF-4F p26 subunit)
Length = 227
Score = 369 bits (948), Expect = e-103, Method: Compositional matrix adjust.
Identities = 183/227 (80%), Positives = 183/227 (80%)
Query: 1 MAEEHETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGXXXXXXXXXXXXXLEHAWTF 60
MAEEHET SG LEHAWTF
Sbjct: 1 MAEEHETRPPSAGRPPSSGRGRADDADEREEGEIADDDSGHAPPQANPAAPHPLEHAWTF 60
Query: 61 WFDNPQGKSKQATWGSSIRPIHTFSTVEDFWSLYNNIHHPSKLVVGADFHCFKNKIEPKW 120
WFDNPQGKSKQATWGSSIRPIHTFSTVEDFWSLYNNIHHPSKLVVGADFHCFKNKIEPKW
Sbjct: 61 WFDNPQGKSKQATWGSSIRPIHTFSTVEDFWSLYNNIHHPSKLVVGADFHCFKNKIEPKW 120
Query: 121 EDPICANGGKWTFSCGRGKSDTMWLHTLLAMIGEQFDYGDEICGAVVSVRGKQERIAIWT 180
EDPICANGGKWTFSCGRGKSDTMWLHTLLAMIGEQFDYGDEICGAVVSVRGKQERIAIWT
Sbjct: 121 EDPICANGGKWTFSCGRGKSDTMWLHTLLAMIGEQFDYGDEICGAVVSVRGKQERIAIWT 180
Query: 181 KNAANEAAQISIGKQWKEFLDYKDSIGFIVHDDAKKMDKGLKNRYTV 227
KNAANEAAQISIGKQWKEFLDYKDSIGFIVHDDAKKMDKGLKNRYTV
Sbjct: 181 KNAANEAAQISIGKQWKEFLDYKDSIGFIVHDDAKKMDKGLKNRYTV 227
>Os10g0467600 cap-binding protein p28 [Oryza sativa (japonica cultivar-group)]
Length = 206
Score = 205 bits (522), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 92/175 (52%), Positives = 119/175 (68%), Gaps = 1/175 (0%)
Query: 54 LEHAWTFWFDNPQGKSKQATWGSSIRPIHTFSTVEDFWSLYNNIHHPSKLVVGADFHCFK 113
L W FW+D A WG+S+R +TF TVE+FW LY+ I PSK+ V ADFH FK
Sbjct: 32 LHRQWAFWYDIQSKPKPGAAWGTSLRKAYTFDTVEEFWGLYDQIFRPSKVTVNADFHLFK 91
Query: 114 NKIEPKWEDPICANGGKWTFSCGRGKS-DTMWLHTLLAMIGEQFDYGDEICGAVVSVRGK 172
+EPKWEDP CANGGKWT C R + + MWL TL+A+IGEQFD +EICG V SVR +
Sbjct: 92 AGVEPKWEDPECANGGKWTVPCSRKTTLENMWLETLMALIGEQFDESEEICGVVASVRQR 151
Query: 173 QERIAIWTKNAANEAAQISIGKQWKEFLDYKDSIGFIVHDDAKKMDKGLKNRYTV 227
+++A+WT+ A+NEA Q++IGK+WKE +DY D + + HDDAK+ RY V
Sbjct: 152 GDKLALWTRTASNEAVQVNIGKKWKEIVDYNDKMVYSFHDDAKREKPSRGGRYNV 206
>AK109012
Length = 252
Score = 127 bits (318), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 67/190 (35%), Positives = 105/190 (55%), Gaps = 18/190 (9%)
Query: 54 LEHAWTFWFDNPQGKS----------------KQATWGSSIRPIHTFSTVEDFWSLYNNI 97
LE+A++FWF K+ + + +++R + TF+TVE+FW LY+++
Sbjct: 59 LEYAYSFWFSKRPSKNAAAAAAASSTATSAPGQNLNYDANLRQVGTFNTVENFWYLYSHM 118
Query: 98 HHPSKLVVGADFHCFKNKIEPKWEDPICANGGKWTFSCGRGKSDTMWLHTLLAMIGEQFD 157
P L AD H FK I P WED NGGKW +G + W + +LA++GEQF
Sbjct: 119 TRPQDLQGHADIHMFKAGIRPLWEDDANKNGGKWIVRLKKGLATRCWENLILAILGEQFM 178
Query: 158 YGDEICGAVVSVRGKQERIAIWTKNAANEAAQISIGKQWKEFLDYKDS--IGFIVHDDAK 215
G+EICGAVVSVR +++ I+IW K+ +N+A + I K L+ S + + H+D+
Sbjct: 179 VGEEICGAVVSVRFQEDLISIWNKSCSNQAVKSRIKDTLKRILNLPPSTILEYKSHNDSL 238
Query: 216 KMDKGLKNRY 225
K + +N +
Sbjct: 239 KDNSSFRNTF 248
>Os03g0262400 Similar to Eukaryotic translation initiation factor 4E type 3
(eIF4E type 3) (eIF-4E type 3) (mRNA cap-binding protein
type 3) (Novel cap-binding protein) (nCBP)
Length = 227
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 88/172 (51%), Gaps = 2/172 (1%)
Query: 54 LEHAWTFWFDNPQGKSKQATWGSSIRPIHTFSTVEDFWSLYNNIHHPSKLVVGADFHCFK 113
L + W+ ++ ++ +I+ I FSTVE FW Y ++ P L D H FK
Sbjct: 51 LRRRFVLWYTRRTPGARSQSYEDNIKKIVDFSTVESFWVCYCHLTRPVSLPSPTDLHLFK 110
Query: 114 NKIEPKWEDPICANGGKWTFSCGRGKSDTMWLHTLLAMIGEQFDYGDEICGAVVSVRGKQ 173
I P WEDP +GGKW + S W +L ++G+Q DY D++CG V+SVR +
Sbjct: 111 EGIRPLWEDPANRSGGKWIIRFKKTVSGRFWEDLVLVLVGDQLDYSDDVCGVVLSVRFNE 170
Query: 174 ERIAIWTKNAANEAAQISIGKQWKEFLDYKDS--IGFIVHDDAKKMDKGLKN 223
+ +++W +NA++ A +++ K L S + + HD + + + +N
Sbjct: 171 DILSVWNRNASDHQAVMTLRDSIKRHLKLPHSYLMEYKPHDASLRDNSSYRN 222
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.134 0.446
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,856,373
Number of extensions: 277013
Number of successful extensions: 390
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 388
Number of HSP's successfully gapped: 4
Length of query: 227
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 130
Effective length of database: 11,971,043
Effective search space: 1556235590
Effective search space used: 1556235590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 154 (63.9 bits)