Os10g0467600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : cap-binding protein p28 [Oryza sativa (japonica cultivar-group)].
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Os10g0467600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : cap-binding protein p28 [Oryza sativa (japonica cultivar-group)].
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48.76 | 0.328 | 12.3 | 0.432 | 0.572 | -0.423 | -0.129 | 0.994 | 0.0596 | 21 | 2 | 7 | -- | -- |
| 53.83 | 0.344 | 12.4 | 0.165 | 0.41 | -0.222 | 0.151 | -- | -0.11 | 19.2 | 2 | 7 | -- | -- |
| 52.15 | 0.336 | 12.4 | 0.105 | 0.634 | 0.228 | -- | 0.562 | -0.119 | 21.3 | 34.96 | 8 | -- | -- |
| 51.82 | 0.335 | 12.4 | 0.182 | 0.433 | -0.272 | -- | -- | -0.108 | 19 | 0.01 | 57 | -- | -- |
| 72.14 | 0.396 | 12.4 | 0.148 | -- | -0.0573 | -- | 0.673 | -0.11 | -- | 32.57 | 106 | -- | -- |
| 54.92 | 0.347 | 12.4 | 0.147 | 0.57 | -- | -0.156 | -- | -0.123 | 20.9 | -- | -- | -- | -- |
| 55 | 0.347 | 12.4 | 0.152 | 0.571 | -- | -- | -- | -0.123 | 20.9 | -- | -- | -- | -- |
| 60.25 | 0.363 | 12.4 | 0.171 | -- | -0.347 | -- | -- | -0.104 | -- | 0.01 | 57 | -- | -- |
| 52.49 | 0.337 | 12.4 | -- | 0.46 | -0.281 | -- | -- | -0.134 | 18.5 | 0.18 | 63 | -- | -- |
| 73.61 | 0.401 | 12.4 | 0.152 | -- | -- | -- | -- | -0.127 | -- | -- | -- | -- | -- |
| 55.61 | 0.349 | 12.4 | -- | 0.571 | -- | -- | -- | -0.14 | 20.9 | -- | -- | -- | -- |
| 60.88 | 0.365 | 12.4 | -- | -- | -0.345 | -- | -- | -0.144 | -- | 0.46 | 43 | -- | -- |
| 74.23 | 0.402 | 12.4 | -- | -- | -- | -- | -- | -0.144 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.69 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 2 | 46.69 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 3 | 46.90 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 8 | 5 |
| 4 | 46.90 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 8 | 5 |
| 23 | 47.43 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 26 | 47.47 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 19 | 9 |
| 27 | 47.52 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 33 | 47.63 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 8 | 6 |
| 47 | 47.80 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 49 | 47.82 | radiation | 1.0 | 90 | < th | dose independent | rect. | 5 | 23 |
| 51 | 47.88 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 52 | 47.89 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 8 | 10 |
| 56 | 47.95 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 8 | 20 |
| 58 | 47.97 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 8 | 14 |
| 66 | 47.99 | temperature | 20.0 | 10 | > th | dose independent | rect. | 24 | 4 |
| 68 | 48.04 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 81 | 48.12 | radiation | 1.0 | 90 | < th | dose independent | sin | 13 | NA |
| 83 | 48.12 | temperature | 30.0 | 720 | < th | dose independent | rect. | 16 | 11 |
| 84 | 48.13 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 17 | 10 |
| 85 | 48.15 | temperature | 30.0 | 720 | < th | dose independent | rect. | 16 | 4 |
| 86 | 48.15 | radiation | 1.0 | 90 | < th | dose dependent | sin | 13 | NA |
| 88 | 48.16 | humidity | 70.0 | 720 | > th | dose independent | rect. | 16 | 11 |
| 104 | 48.23 | humidity | 70.0 | 720 | > th | dose independent | rect. | 16 | 4 |
| 107 | 48.23 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 15 | 12 |
| 115 | 48.26 | temperature | 20.0 | 30 | > th | dose independent | rect. | 20 | 8 |
| 117 | 48.27 | radiation | 10.0 | 270 | < th | dose independent | rect. | 16 | 11 |
| 129 | 48.35 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 136 | 48.39 | radiation | 10.0 | 1440 | < th | dose dependent | sin | 20 | NA |
| 138 | 48.40 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 8 | 10 |
| 167 | 48.50 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 9 | 19 |
| 171 | 48.53 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 4 | 15 |
| 174 | 48.54 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 17 | 21 |
| 191 | 48.59 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 211 | 48.63 | radiation | 10.0 | 1440 | > th | dose independent | sin | 23 | NA |
| 226 | 48.65 | radiation | 1.0 | 90 | < th | dose independent | rect. | 9 | 19 |
| 230 | 48.65 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 5 |
| 303 | 48.74 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 14 |
| 308 | 48.74 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 16 | 11 |
| 311 | 48.74 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 14 |
| 315 | 48.76 | radiation | 10.0 | 1440 | > th | dose independent | no | NA | NA |
| 400 | 48.78 | temperature | 15.0 | 270 | > th | dose independent | rect. | 3 | 14 |
| 402 | 48.78 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 19 | 9 |
| 430 | 48.82 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 24 | 8 |
| 453 | 48.85 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 4 | 4 |
| 524 | 48.90 | humidity | 50.0 | 270 | > th | dose independent | rect. | 17 | 10 |
| 590 | 48.96 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 7 | 7 |
| 612 | 48.99 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 24 | 8 |
| 619 | 49.00 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 634 | 49.01 | temperature | 10.0 | 270 | > th | dose independent | rect. | 17 | 10 |
| 639 | 49.01 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 14 |
| 652 | 49.02 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 16 | 5 |
| 670 | 49.06 | wind | 9.0 | 270 | < th | dose independent | rect. | 17 | 10 |
| 683 | 49.07 | radiation | 1.0 | 30 | < th | dose independent | rect. | 19 | 23 |
| 688 | 49.07 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 12 | 20 |
| 690 | 49.07 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 747 | 49.13 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 20 | 8 |
| 749 | 49.14 | wind | 9.0 | 270 | < th | dose independent | rect. | 3 | 14 |
| 769 | 49.16 | radiation | 1.0 | 30 | > th | dose independent | rect. | 14 | 19 |
| 783 | 49.17 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 801 | 49.19 | temperature | 20.0 | 270 | > th | dose independent | rect. | 22 | 4 |
| 826 | 49.22 | wind | 9.0 | 90 | < th | dose independent | rect. | 19 | 9 |
| 839 | 49.24 | radiation | 1.0 | 90 | > th | dose independent | sin | 13 | NA |
| 841 | 49.24 | temperature | 10.0 | 90 | > th | dose independent | rect. | 19 | 9 |
| 842 | 49.24 | temperature | 30.0 | 90 | < th | dose independent | rect. | 19 | 9 |
| 843 | 49.24 | humidity | 50.0 | 90 | > th | dose independent | rect. | 19 | 9 |
| 846 | 49.24 | radiation | 1.0 | 90 | < th | dose independent | rect. | 19 | 9 |
| 855 | 49.24 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 19 | 9 |
| 864 | 49.25 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 4 | 5 |
| 866 | 49.26 | radiation | 1.0 | 30 | < th | dose independent | rect. | 19 | 19 |
| 901 | 49.30 | radiation | 1.0 | 30 | < th | dose independent | rect. | 19 | 11 |
| 906 | 49.30 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 23 | 10 |
| 909 | 49.30 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 12 | 12 |
| 912 | 49.31 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 10 | 5 |
| 926 | 49.32 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 19 | 19 |
| 931 | 49.33 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 17 | 4 |
| 961 | 49.35 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 964 | 49.35 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 19 | 9 |
| 971 | 49.36 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 16 | 8 |
| 988 | 49.39 | radiation | 1.0 | 30 | > th | dose independent | rect. | 12 | 21 |
| 989 | 49.39 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 12 | 1 |