BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0969700 Os01g0969700|AK071720
(239 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0969700 Protein kinase-like domain containing protein 499 e-142
Os01g0967600 Conserved hypothetical protein 106 1e-23
>Os01g0969700 Protein kinase-like domain containing protein
Length = 239
Score = 499 bits (1286), Expect = e-142, Method: Compositional matrix adjust.
Identities = 239/239 (100%), Positives = 239/239 (100%)
Query: 1 MGEPLRTLQNDQSEAKDKGNKIDIKYELTSAILSLKHQQASGRLKMPSRLPARYPHNVGH 60
MGEPLRTLQNDQSEAKDKGNKIDIKYELTSAILSLKHQQASGRLKMPSRLPARYPHNVGH
Sbjct: 1 MGEPLRTLQNDQSEAKDKGNKIDIKYELTSAILSLKHQQASGRLKMPSRLPARYPHNVGH 60
Query: 61 CAELIMNLGIGEDVHCLNVMRSCNHENILHPGIIKEVIIGDSSFNVAWMERYTRVLSEYV 120
CAELIMNLGIGEDVHCLNVMRSCNHENILHPGIIKEVIIGDSSFNVAWMERYTRVLSEYV
Sbjct: 61 CAELIMNLGIGEDVHCLNVMRSCNHENILHPGIIKEVIIGDSSFNVAWMERYTRVLSEYV 120
Query: 121 QLLLSTARFHAPVGATLLLPSPHLQMVLRGIFDGMEQLFLNGYYHGNFSLENTYCFLECS 180
QLLLSTARFHAPVGATLLLPSPHLQMVLRGIFDGMEQLFLNGYYHGNFSLENTYCFLECS
Sbjct: 121 QLLLSTARFHAPVGATLLLPSPHLQMVLRGIFDGMEQLFLNGYYHGNFSLENTYCFLECS 180
Query: 181 TPVVKLTNFRKKVPEQAMTWGVEEVRSDRYLSISCIECEICSFVACSLDQVVGSSLFCV 239
TPVVKLTNFRKKVPEQAMTWGVEEVRSDRYLSISCIECEICSFVACSLDQVVGSSLFCV
Sbjct: 181 TPVVKLTNFRKKVPEQAMTWGVEEVRSDRYLSISCIECEICSFVACSLDQVVGSSLFCV 239
>Os01g0967600 Conserved hypothetical protein
Length = 360
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/183 (37%), Positives = 100/183 (54%), Gaps = 6/183 (3%)
Query: 12 QSEAKDKGNKIDIKYELTSAILSLKHQQASGRLKMPSRLPARYPHNVGHCAELIMNLGIG 71
Q E+K + I+I YEL K QQ S R K+PS +P +Y + LI +L
Sbjct: 8 QPESKGQKKTINIGYELAHQAWDFKIQQGSCRAKIPSNIPRQYDPIQNLDSVLIFDLMDN 67
Query: 72 ED-VHCLNVMRSCNHENILHPGIIKEVIIGDSSFNVAWMERYTRVLSEYVQLLLSTARFH 130
+ +HCL +M +C H+NILH I+++ D W E YT L Y++ L A+
Sbjct: 68 SNGLHCLEIMTNCLHKNILHAPIVQKK--EDVDCISVWHEPYTGNLLAYLESTLLGAKHM 125
Query: 131 APVGATLLLPSPHLQMVLRGIFDGMEQLFLNGYYHGNFSLENTYCFLECSTP-VVKLTNF 189
VG ++LP+P LQ ++ +FDG++ L L G YHGNF+LE TY + + +VKL NF
Sbjct: 126 --VGEKVVLPTPVLQNLISQVFDGLKMLRLCGKYHGNFTLEKTYYYKKNGNEIIVKLANF 183
Query: 190 RKK 192
K
Sbjct: 184 EVK 186
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.137 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,075,710
Number of extensions: 324334
Number of successful extensions: 561
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 559
Number of HSP's successfully gapped: 2
Length of query: 239
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 141
Effective length of database: 11,918,829
Effective search space: 1680554889
Effective search space used: 1680554889
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 154 (63.9 bits)