BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0962200 Os01g0962200|AK067659
         (294 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0962200  Conserved hypothetical protein                      541   e-154
Os01g0197500  Protein prenyltransferase domain containing pr...   172   4e-43

>Os01g0962200 Conserved hypothetical protein
          Length = 294

 Score =  541 bits (1393), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 267/294 (90%), Positives = 267/294 (90%)

Query: 1   MDVSRRKKWVAWVAAVTIFVVLMLVTPAIPQNEEYHDFADQRRLFLGIPNTLNVISNIPX 60
           MDVSRRKKWVAWVAAVTIFVVLMLVTPAIPQNEEYHDFADQRRLFLGIPNTLNVISNIP 
Sbjct: 1   MDVSRRKKWVAWVAAVTIFVVLMLVTPAIPQNEEYHDFADQRRLFLGIPNTLNVISNIPF 60

Query: 61  XXXXXXXXXXCHYKNYFRLNSQGELWSWTLFFAGVTAVAFGSSYYHLKPNDATLVWDRLP 120
                     CHYKNYFRLNSQGELWSWTLFFAGVTAVAFGSSYYHLKPNDATLVWDRLP
Sbjct: 61  FFVGVVGLVLCHYKNYFRLNSQGELWSWTLFFAGVTAVAFGSSYYHLKPNDATLVWDRLP 120

Query: 121 MTIAFTSVMAIFIIERVDDRAGTKSLAPLVIAGALSIMYWRFFDDLRPYAVIQFXXXXXX 180
           MTIAFTSVMAIFIIERVDDRAGTKSLAPLVIAGALSIMYWRFFDDLRPYAVIQF      
Sbjct: 121 MTIAFTSVMAIFIIERVDDRAGTKSLAPLVIAGALSIMYWRFFDDLRPYAVIQFVPCIAI 180

Query: 181 XXXXXXXXXXYTHSSYWLWAAGFYLLAKVEEAADKPIYKWTHQIVSGHTLKHLAAAMVPV 240
                     YTHSSYWLWAAGFYLLAKVEEAADKPIYKWTHQIVSGHTLKHLAAAMVPV
Sbjct: 181 PVMAIVIPPMYTHSSYWLWAAGFYLLAKVEEAADKPIYKWTHQIVSGHTLKHLAAAMVPV 240

Query: 241 FLALMLAKRTVEPERVSLFQRWKVKLVAVRETRFNKDRNTVDYNYIAVSTTPEP 294
           FLALMLAKRTVEPERVSLFQRWKVKLVAVRETRFNKDRNTVDYNYIAVSTTPEP
Sbjct: 241 FLALMLAKRTVEPERVSLFQRWKVKLVAVRETRFNKDRNTVDYNYIAVSTTPEP 294



>Os01g0197500 Protein prenyltransferase domain containing protein
          Length = 906

 Score =  172 bits (435), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 96/240 (40%), Positives = 134/240 (55%), Gaps = 2/240 (0%)

Query: 14  AAVTIFVVLMLVTPAIPQNEEYHDFADQRRLFLGIPNTLNVISNIPXXXXXXXXXXXCHY 73
            AV    +L++ TP +  +   H FAD R L LG+PNTLNV++  P           C  
Sbjct: 43  GAVLASALLLVATPRLRHSPALHLFADMRNL-LGVPNTLNVLTAYPLLLAGVPGLVLCLC 101

Query: 74  -KNYFRLNSQGELWSWTLFFAGVTAVAFGSSYYHLKPNDATLVWDRLPMTIAFTSVMAIF 132
               F ++ + E   W LF+AG  A AFGS+YYHLKP+D  L+WDRLPM I+ +S+++I 
Sbjct: 102 GSGCFGISLRWEALGWFLFYAGNVAAAFGSAYYHLKPDDDRLIWDRLPMMISASSMLSIL 161

Query: 133 IIERVDDRAGTKSLAPLVIAGALSIMYWRFFDDLRPYAVIQFXXXXXXXXXXXXXXXXYT 192
           +IERVD+RAG   L  L+    +S    R  DD+R + V+                  YT
Sbjct: 162 VIERVDERAGLSCLLSLLSLILVSSACERVLDDMRLWVVLNSAPCIAIPAMLFLFPPKYT 221

Query: 193 HSSYWLWAAGFYLLAKVEEAADKPIYKWTHQIVSGHTLKHLAAAMVPVFLALMLAKRTVE 252
           HS +W  A GFYLLA+ E  AD+ +Y      +SGH+L+HL  AMV + L +ML+ R V+
Sbjct: 222 HSRFWFLATGFYLLARFEGLADRKVYSVNRYFISGHSLEHLCFAMVTLILTVMLSFRNVK 281



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.326    0.137    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,726,863
Number of extensions: 289347
Number of successful extensions: 890
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 886
Number of HSP's successfully gapped: 2
Length of query: 294
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 194
Effective length of database: 11,814,401
Effective search space: 2291993794
Effective search space used: 2291993794
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 155 (64.3 bits)