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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0197500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein prenyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.39 (0.0375) R2 : 0.546
β1 : 1.39 (0.137) R2dD : 0.107 R2D : 0.103
β2 : 2 (0.0958) R2dC : 0.439 R2C : 0.434
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0766 (0.08) R2dN8 : 0.00122 R2N8 : 0.0025
σ : 0.705
deviance : 226.69
__
_____
C
peak time of C : 19.8
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
207.67 0.677 5.4 1.19 2.37 -1.12 1.2 -0.0189 -0.0738 19.8 2.3 531 -- --
207.67 0.671 5.4 1.19 2.37 -1.11 1.2 -- -0.0731 19.8 2.268 529 -- --
210.81 0.676 5.41 1.17 2.41 -1.13 -- 1.03 -0.0823 19.8 2.098 529 -- --
211.63 0.678 5.4 1.13 2.4 -1.25 -- -- -0.0735 19.8 2.387 532 -- --
434.74 0.976 5.35 1.52 -- 0.648 -- 1.2 -0.112 -- 2.098 529 -- --
219.26 0.694 5.39 1.44 2.01 -- 1.61 -- -0.078 19.8 -- -- -- --
226.69 0.705 5.39 1.39 2 -- -- -- -0.0766 19.8 -- -- -- --
399.63 0.931 5.33 1.76 -- 1.55 -- -- -0.0941 -- 0.8 455 -- --
243.37 0.727 5.4 -- 2.5 -1.54 -- -- -0.104 19.9 2.349 565 -- --
444.41 0.985 5.34 1.37 -- -- -- -- -0.104 -- -- -- -- --
277.89 0.78 5.42 -- 1.99 -- -- -- -0.232 19.9 -- -- -- --
474.1 1.01 5.39 -- -- 1.16 -- -- -0.31 -- 0.4 457 -- --
493.94 1.04 5.37 -- -- -- -- -- -0.256 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 201.26 wind 1.0 90 < th dose dependent rect. 7 2
2 201.58 wind 7.0 720 < th dose independent rect. 22 16
4 202.38 wind 1.0 720 > th dose dependent rect. 10 1
5 202.67 temperature 25.0 30 > th dose dependent rect. 7 1
7 203.08 radiation 10.0 30 > th dose independent rect. 6 7
34 203.52 wind 7.0 270 < th dose independent rect. 11 21
35 203.70 temperature 25.0 270 > th dose independent rect. 11 6
37 203.74 temperature 25.0 30 > th dose independent rect. 7 1
38 203.78 wind 9.0 270 < th dose dependent rect. 11 21
39 203.79 wind 5.0 720 < th dose independent rect. 3 11
42 203.97 temperature 10.0 30 > th dose dependent rect. 8 23
44 204.11 wind 5.0 720 < th dose independent rect. 3 7
45 204.13 wind 7.0 90 < th dose independent rect. 13 21
47 204.20 wind 5.0 720 > th dose independent rect. 10 1
49 204.37 temperature 25.0 270 > th dose independent rect. 9 9
77 204.75 temperature 30.0 30 < th dose dependent rect. 4 7
98 204.90 wind 1.0 270 > th dose dependent rect. 17 20
101 204.93 wind 1.0 90 < th dose independent rect. 7 2
106 205.02 wind 7.0 1440 < th dose dependent rect. 10 1
132 205.41 humidity 80.0 30 < th dose independent rect. 8 6
135 205.41 wind 3.0 720 > th dose dependent rect. 2 11
137 205.47 wind 9.0 4320 > th dose independent rect. 12 2
140 205.51 temperature 25.0 720 > th dose independent rect. 9 5
159 205.54 humidity 90.0 14400 < th dose independent rect. 4 2
177 205.63 radiation 40.0 720 < th dose independent rect. 24 13
184 205.71 atmosphere 1000.0 90 > th dose independent rect. 10 17
199 205.80 wind 7.0 4320 > th dose dependent rect. 12 2
201 205.81 radiation 20.0 30 < th dose dependent rect. 4 7
214 205.91 wind 9.0 720 < th dose dependent rect. 7 17
217 205.93 atmosphere 1000.0 90 > th dose independent rect. 10 3
227 205.99 wind 9.0 4320 < th dose independent rect. 12 2
229 206.00 wind 5.0 720 > th dose independent rect. 5 8
232 206.01 wind 5.0 720 > th dose independent rect. 19 18
239 206.04 wind 5.0 720 > th dose independent rect. 7 5
251 206.09 wind 7.0 720 < th dose independent rect. 7 8
255 206.11 temperature 10.0 30 > th dose dependent rect. 8 20
257 206.12 wind 5.0 720 > th dose independent rect. 3 10
259 206.13 humidity 90.0 14400 > th dose independent rect. 5 1
269 206.18 atmosphere 1000.0 10 > th dose independent rect. 10 4
270 206.18 wind 5.0 720 < th dose independent rect. 3 21
274 206.20 wind 7.0 720 < th dose independent rect. 7 17
275 206.20 atmosphere 1015.0 90 < th dose dependent rect. 13 6
282 206.24 wind 7.0 270 > th dose independent rect. 17 21
290 206.29 radiation 10.0 30 > th dose independent sin 4 NA
291 206.29 wind 5.0 1440 < th dose independent rect. 10 1
333 206.46 atmosphere 1000.0 270 > th dose independent rect. 8 15
346 206.51 wind 9.0 720 < th dose dependent rect. 3 21
375 206.57 wind 3.0 720 > th dose dependent sin 5 NA
376 206.57 wind 9.0 4320 > th dose dependent rect. 12 6
389 206.60 temperature 20.0 270 > th dose dependent rect. 11 5
391 206.62 atmosphere 1000.0 270 > th dose independent rect. 8 17
401 206.65 atmosphere 1000.0 270 > th dose independent rect. 8 4
419 206.73 wind 9.0 720 < th dose independent rect. 3 16
431 206.75 radiation 30.0 270 < th dose independent rect. 8 17
432 206.75 atmosphere 1000.0 30 > th dose independent rect. 8 20
438 206.76 wind 9.0 4320 > th dose dependent rect. 12 12
447 206.78 radiation 40.0 270 < th dose independent rect. 8 4
448 206.78 humidity 90.0 14400 < th dose independent rect. 1 6
467 206.82 temperature 20.0 270 > th dose dependent rect. 9 8
485 206.87 humidity 90.0 14400 < th dose independent rect. 3 4
496 206.89 temperature 30.0 90 < th dose independent rect. 10 3
516 206.95 humidity 90.0 10 < th dose independent rect. 10 4
523 206.96 radiation 40.0 720 < th dose independent rect. 10 17
532 206.98 wind 1.0 90 > th dose independent rect. 10 3
535 206.99 atmosphere 1010.0 10 < th dose dependent rect. 13 6
539 207.00 temperature 30.0 270 < th dose independent rect. 8 4
545 207.01 radiation 40.0 720 < th dose independent rect. 24 17
547 207.02 precipitation 0.1 90 < th dose independent rect. 10 3
550 207.02 precipitation 0.1 90 < th dose dependent rect. 10 3
553 207.03 temperature 10.0 90 > th dose independent rect. 10 3
555 207.03 atmosphere 1015.0 90 < th dose independent rect. 10 3
557 207.03 temperature 10.0 90 > th dose independent rect. 13 21
568 207.05 wind 7.0 720 < th dose independent sin 6 NA
587 207.08 wind 3.0 43200 < th dose dependent rect. 16 1
593 207.09 atmosphere 1010.0 30 < th dose independent rect. 4 4
601 207.11 radiation 1.0 90 > th dose independent rect. 10 3
602 207.11 wind 9.0 4320 > th dose independent rect. 12 6
618 207.14 wind 9.0 4320 > th dose independent rect. 12 12
631 207.17 radiation 30.0 720 < th dose independent rect. 11 1
664 207.23 temperature 25.0 720 < th dose independent rect. 10 1
674 207.25 radiation 20.0 270 < th dose independent rect. 8 1
681 207.26 atmosphere 1000.0 90 > th dose independent rect. 10 13
703 207.30 wind 9.0 90 < th dose independent rect. 10 3
710 207.30 wind 3.0 270 < th dose dependent rect. 4 1
724 207.32 temperature 20.0 270 > th dose dependent rect. 12 3
728 207.33 temperature 10.0 270 > th dose dependent rect. 8 20
730 207.34 temperature 25.0 720 < th dose dependent rect. 9 8
734 207.35 radiation 40.0 720 < th dose independent rect. 24 22
743 207.36 atmosphere 995.0 90 > th dose dependent rect. 10 3
758 207.37 atmosphere 995.0 10 > th dose dependent rect. 10 4
760 207.37 atmosphere 995.0 30 > th dose dependent rect. 8 6
762 207.38 wind 1.0 270 > th dose independent rect. 8 3
763 207.38 atmosphere 1000.0 90 > th dose independent rect. 3 7
764 207.38 wind 9.0 4320 < th dose independent rect. 13 12
777 207.39 radiation 40.0 720 < th dose independent rect. 24 20
778 207.39 wind 7.0 270 > th dose dependent sin 8 NA
780 207.39 atmosphere 995.0 270 > th dose dependent rect. 8 4
782 207.40 humidity 50.0 90 > th dose independent rect. 10 3
787 207.41 wind 3.0 10 > th dose independent rect. 10 4
795 207.41 temperature 25.0 720 < th dose dependent rect. 8 10
824 207.45 precipitation 0.1 90 < th dose independent rect. 13 21
829 207.45 precipitation 0.1 90 < th dose dependent rect. 13 21
830 207.46 wind 1.0 14400 < th dose independent rect. 2 1
851 207.48 atmosphere 1000.0 30 > th dose independent rect. 8 6
859 207.49 wind 5.0 720 > th dose independent sin 5 NA
872 207.52 wind 9.0 4320 < th dose independent rect. 12 6
909 207.56 radiation 40.0 720 < th dose independent rect. 15 22
934 207.59 wind 5.0 270 < th dose independent rect. 22 10
940 207.60 atmosphere 1010.0 90 < th dose independent rect. 3 7
945 207.60 wind 9.0 720 < th dose dependent rect. 3 11
974 207.64 radiation 30.0 270 > th dose independent rect. 12 21
999 207.67 wind 1.0 10 > th dose dependent rect. 10 4