BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0946200 Os01g0946200|AK071060
(204 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0946200 No apical meristem (NAM) protein domain contai... 346 5e-96
Os01g0378400 110 5e-25
Os07g0195600 75 4e-14
Os07g0272700 No apical meristem (NAM) protein domain contai... 74 9e-14
Os07g0196800 70 1e-12
Os07g0196500 69 2e-12
Os05g0325300 65 5e-11
Os07g0457100 64 6e-11
>Os01g0946200 No apical meristem (NAM) protein domain containing protein
Length = 204
Score = 346 bits (888), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 168/178 (94%), Positives = 168/178 (94%)
Query: 1 MGKEMNLIREDEYGGGGVGFEPTEDELMLHFLRPQLRGFAPRVAGAVVEADPCGAAPWEL 60
MGKEMNLIREDEYGGGGVGFEPTEDELMLHFLRPQLRGFAPRVAGAVVEADPCGAAPWEL
Sbjct: 1 MGKEMNLIREDEYGGGGVGFEPTEDELMLHFLRPQLRGFAPRVAGAVVEADPCGAAPWEL 60
Query: 61 LARHGRREEGFFFSARARRKPSVRRTVAXXXXXXXXXXAWMHSSTKNGQSVTDLGVVVRW 120
LARHGRREEGFFFSARARRKPSVRRTVA AWMHSSTKNGQSVTDLGVVVRW
Sbjct: 61 LARHGRREEGFFFSARARRKPSVRRTVAGCGGGGGGGGAWMHSSTKNGQSVTDLGVVVRW 120
Query: 121 CRINYCFYVRGEMGQQRSTGWMMAEYEITDPRCYRRADDGEEDDFWVLCHVRKSSRPQ 178
CRINYCFYVRGEMGQQRSTGWMMAEYEITDPRCYRRADDGEEDDFWVLCHVRKSSRPQ
Sbjct: 121 CRINYCFYVRGEMGQQRSTGWMMAEYEITDPRCYRRADDGEEDDFWVLCHVRKSSRPQ 178
>Os01g0378400
Length = 429
Score = 110 bits (276), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 84/176 (47%), Positives = 108/176 (61%), Gaps = 21/176 (11%)
Query: 18 VGFE--PTEDELMLHFLRPQLRGF------APRVAGAVVEADPCGAAPWELLARHG---- 65
GF+ PT EL+L LRP+LRGF P + V DP AAP +L+ARHG
Sbjct: 59 TGFQDTPTVGELVLRHLRPRLRGFHCADGDVPVIG---VRDDPAAAAPLDLVARHGGAAD 115
Query: 66 -RREEGFFF-SARARRKPSVRRTVAXXXXXXXXXXA-WMHSSTKNGQSVTDLGVVVRWCR 122
RR E F+F R R+P+VRRTVA W S T +G+SVTDLGVVV W +
Sbjct: 116 RRRGEAFYFVRRRRCRRPNVRRTVAEGGGGGGGAGGLWKKSWTGSGKSVTDLGVVVPWSK 175
Query: 123 INYCFYVRGEMGQQRS--TGWMMAEYEITDPRCYRRA-DDGEEDDFWVLCHVRKSS 175
YCFY R E G+ + GW++AEYEIT+P YRRA ++ ++DD+WVLCHVRK++
Sbjct: 176 TCYCFYRRDEGGRLSTFGGGWVLAEYEITEPGTYRRADEEEDDDDYWVLCHVRKTA 231
>Os07g0195600
Length = 664
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 74/141 (52%), Gaps = 16/141 (11%)
Query: 17 GVGFEPTEDELMLHFLRPQLRGFAPRVAGAVVEADPCGAAPWELLARHGRREEGFFFS-A 75
G+ FEP +DEL+ FL +++G + G +++ADP A PW LLA HGR +E FFF+ A
Sbjct: 12 GLKFEPKDDELVARFLLARIQGKPLPLHGVILDADPLCAPPWRLLADHGRGDEAFFFADA 71
Query: 76 RARRKPSVR--RTVAXXXXXXXXXXAWM-HSSTKNGQ--SVTDLGVVVRWCRINYCFYVR 130
RA+ R RTV W +G+ V D G+ + W + ++
Sbjct: 72 RAKNGKGSRQKRTVEGGGY-------WQGQRMCVDGERLVVPDGGLEIAWRKYVLSYFAD 124
Query: 131 GEMGQQRSTGWMMAEYEITDP 151
GE G S+GW+M EY IT P
Sbjct: 125 GEKG---SSGWVMHEYAITTP 142
>Os07g0272700 No apical meristem (NAM) protein domain containing protein
Length = 605
Score = 73.6 bits (179), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 75/144 (52%), Gaps = 19/144 (13%)
Query: 17 GVGFEPTEDELMLHFLRPQLRGFAPRVAGAVVEADPCGAAPWELLARHGRREEGFFFS-A 75
G+ F+PT+ EL+ FL +L+G + G ++EADP PW+LLA HGR +EGFFF+ A
Sbjct: 14 GLRFDPTDGELVSRFLLRRLQGKPLPLNGVILEADPLSVPPWKLLAEHGRGDEGFFFAEA 73
Query: 76 RARRKPSVR--RTVAXXXXXXXXXXAWM-HSSTKNGQS--VTDLG---VVVRWCRINYCF 127
RA+ R RTV W +G+ V D G V + W + F
Sbjct: 74 RAKNGKGSRQKRTV-------EGSGLWQGQRVCADGEKLLVPDGGGVEVEIVWRKYLLSF 126
Query: 128 YVRGEMGQQRSTGWMMAEYEITDP 151
+ GE G S+GW+M EY +T P
Sbjct: 127 FAEGERG---SSGWVMHEYAVTSP 147
>Os07g0196800
Length = 678
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 68/138 (49%), Gaps = 6/138 (4%)
Query: 17 GVGFEPTEDELMLHFLRPQLRGFAPRVAGAVVEADPCGAAPWELLARHGRREEGFFFS-A 75
G+ FEP +DEL+ FL +++G + G +++ADP A PW LLA HGR ++ FFF+ A
Sbjct: 12 GLRFEPKDDELVARFLLARIQGKPLPLHGVILDADPLCAPPWRLLADHGRGDDAFFFAEA 71
Query: 76 RARRKPSVR--RTVAXXXXXXXXXXAWMHSSTKNGQSVTDLGVVVRWCRINYCFYVRGEM 133
RA+ R RTV GV + W + ++ GE
Sbjct: 72 RAKNGKGSRQKRTVEGGGYWQGQRMCVDGERLVVPDGGGGGGVEIAWRKYVLSYFADGEK 131
Query: 134 GQQRSTGWMMAEYEITDP 151
G S+GW+M EY IT P
Sbjct: 132 G---SSGWVMHEYAITSP 146
>Os07g0196500
Length = 706
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 68/138 (49%), Gaps = 6/138 (4%)
Query: 17 GVGFEPTEDELMLHFLRPQLRGFAPRVAGAVVEADPCGAAPWELLARHGRREEGFFFS-A 75
G+ FEP +DEL+ FL +++G + G +++ADP A PW LLA HGR ++ FFF+ A
Sbjct: 12 GLRFEPKDDELVARFLLARIQGKPLPLHGVILDADPLCAPPWRLLADHGRGDDAFFFAEA 71
Query: 76 RARRKPSVR--RTVAXXXXXXXXXXAWMHSSTKNGQSVTDLGVVVRWCRINYCFYVRGEM 133
RA+ R RTV GV + W + ++ GE
Sbjct: 72 RAKNGKGSRQKRTVEGGGYWQGQRMCVDGERLVVPDGGGGGGVEIAWRKYVLSYFADGEK 131
Query: 134 GQQRSTGWMMAEYEITDP 151
G S+GW+M EY IT P
Sbjct: 132 G---SSGWVMHEYAITAP 146
>Os05g0325300
Length = 567
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 75/150 (50%), Gaps = 25/150 (16%)
Query: 17 GVGFEPTEDELMLHFLRPQLRGFAPRVAGAVVEADPCGAAPWELLARHGRREEGFFFS-- 74
G+ F+P++ +L+ +L +L+G + G ++EADP A PW+LLA HGR +E FFF+
Sbjct: 10 GLKFDPSDHDLVGRYLLRRLQGQPLPLDGVILEADPLSAPPWKLLADHGRGDEAFFFAEA 69
Query: 75 -ARARRKPSVRRTVAXXXXXXXXXXAWMHSST-KNGQSV-----------TDLGVVVRWC 121
A+ + +RTV W +T +G+ + G+ + W
Sbjct: 70 HAKNGKGKRQKRTVEGGGF-------WQGQNTCVDGERLCVPDDGDGSGGGGGGLEIAWR 122
Query: 122 RINYCFYVRGEMGQQRSTGWMMAEYEITDP 151
+ F+ GE G S+GW+M EY +T P
Sbjct: 123 KYVLSFFANGERG---SSGWVMHEYAVTAP 149
>Os07g0457100
Length = 637
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 70/143 (48%), Gaps = 11/143 (7%)
Query: 17 GVGFEPTEDELMLHFLRPQLRGFAPRVAGAVVEADPCGAAPWELLARHGR-REEGFFFS- 74
GV F+P +DEL+ +L +LR + G + EADP GA PW LLA HGR +E FFF+
Sbjct: 11 GVRFDPADDELVSRYLLRRLRKQPIPLHGVIHEADPLGAPPWMLLADHGRGGDEAFFFAE 70
Query: 75 ARARRKPSVR--RTVAX----XXXXXXXXXAWMHSSTKNGQSVTDLGVVVRWCRINYCFY 128
ARA+ R RTV + +G G+ + W + F+
Sbjct: 71 ARAKNVKGKRQKRTVEGGGFWQGQRVCVDGERLSVPGGDGGGEVGGGLEIEWRKYMLSFF 130
Query: 129 VRGEMGQQRSTGWMMAEYEITDP 151
GE G S+GW+M EY IT P
Sbjct: 131 AEGERG---SSGWVMHEYAITAP 150
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.138 0.453
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,712,831
Number of extensions: 270266
Number of successful extensions: 913
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 905
Number of HSP's successfully gapped: 10
Length of query: 204
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 108
Effective length of database: 12,023,257
Effective search space: 1298511756
Effective search space used: 1298511756
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 153 (63.5 bits)