BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0919500 Os01g0919500|AK059108
         (241 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0919500  Zinc finger, RING-type domain containing protein    436   e-123
Os09g0504700  Zinc finger, RING-type domain containing protein    112   3e-25

>Os01g0919500 Zinc finger, RING-type domain containing protein
          Length = 241

 Score =  436 bits (1121), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 216/241 (89%), Positives = 216/241 (89%)

Query: 1   MSSHDFARRVPKRRRTNKXXXXXXXXXXXXXAEGADDGGSPSSSVLVSHAQTSAVAVAGT 60
           MSSHDFARRVPKRRRTNK             AEGADDGGSPSSSVLVSHAQTSAVAVAGT
Sbjct: 1   MSSHDFARRVPKRRRTNKLLSQLLPDLNSLPAEGADDGGSPSSSVLVSHAQTSAVAVAGT 60

Query: 61  SQYLVPAVVAGPHIGMSSCPXXXXXXXXXXXXYSASSFPQVRQQAPRTEPVVTIEDDSET 120
           SQYLVPAVVAGPHIGMSSCP            YSASSFPQVRQQAPRTEPVVTIEDDSET
Sbjct: 61  SQYLVPAVVAGPHIGMSSCPIIVDDINDDVVIYSASSFPQVRQQAPRTEPVVTIEDDSET 120

Query: 121 TPGQAGDAVDEHVDILLSLTLGRYPRHGHQRSSNISTSPVIHIIDTPSNALPEPEKAVPK 180
           TPGQAGDAVDEHVDILLSLTLGRYPRHGHQRSSNISTSPVIHIIDTPSNALPEPEKAVPK
Sbjct: 121 TPGQAGDAVDEHVDILLSLTLGRYPRHGHQRSSNISTSPVIHIIDTPSNALPEPEKAVPK 180

Query: 181 EPTFNCPVCMNELVEPSSTICGHIFCKQCIKASIQAQKKCPTCRRKLTMNNFHRVYLPSA 240
           EPTFNCPVCMNELVEPSSTICGHIFCKQCIKASIQAQKKCPTCRRKLTMNNFHRVYLPSA
Sbjct: 181 EPTFNCPVCMNELVEPSSTICGHIFCKQCIKASIQAQKKCPTCRRKLTMNNFHRVYLPSA 240

Query: 241 E 241
           E
Sbjct: 241 E 241



>Os09g0504700 Zinc finger, RING-type domain containing protein
          Length = 191

 Score =  112 bits (279), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 55/102 (53%), Positives = 68/102 (66%), Gaps = 11/102 (10%)

Query: 146 RHGHQRSSNISTSPVIHIID------TPSNALPEPEKAVPKEPTFNCPVCMNELVEPSST 199
           R G++R      +PVIH +       +      EP KA  KEP FNCPVC N+L EPS+T
Sbjct: 94  REGNKRQR---VAPVIHCLSPERGEGSSLKTSNEPPKA--KEPVFNCPVCWNKLEEPSTT 148

Query: 200 ICGHIFCKQCIKASIQAQKKCPTCRRKLTMNNFHRVYLPSAE 241
           ICGHIFC  CIK +IQ QKKCPTCR+ L  NNFHR+YLP+++
Sbjct: 149 ICGHIFCTTCIKQAIQIQKKCPTCRKSLRANNFHRIYLPNSD 190



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.129    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,377,510
Number of extensions: 343922
Number of successful extensions: 1432
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1435
Number of HSP's successfully gapped: 2
Length of query: 241
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 143
Effective length of database: 11,918,829
Effective search space: 1704392547
Effective search space used: 1704392547
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 154 (63.9 bits)