Os01g0919500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os01g0919500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 12.14 | 0.164 | 11.4 | 0.703 | 0.204 | -0.522 | -0.107 | 0.929 | 0.151 | 7.42 | 20.17 | 1054 | -- | -- |
| 12.85 | 0.167 | 11.4 | 0.47 | 0.186 | -0.492 | -0.155 | -- | 0.0857 | 7.2 | 19.66 | 1014 | -- | -- |
| 12.16 | 0.162 | 11.4 | 0.7 | 0.188 | -0.527 | -- | 0.972 | 0.149 | 7.4 | 20.13 | 1002 | -- | -- |
| 12.77 | 0.166 | 11.4 | 0.463 | 0.175 | -0.547 | -- | -- | 0.0912 | 7.4 | 17.76 | 955 | -- | -- |
| 12.88 | 0.167 | 11.4 | 0.741 | -- | -0.642 | -- | 1.18 | 0.169 | -- | 20.71 | 776 | -- | -- |
| 18.35 | 0.201 | 11.4 | 0.309 | 0.266 | -- | -0.136 | -- | -0.015 | 8.74 | -- | -- | -- | -- |
| 18.41 | 0.201 | 11.4 | 0.305 | 0.266 | -- | -- | -- | -0.015 | 8.78 | -- | -- | -- | -- |
| 13.6 | 0.172 | 11.4 | 0.493 | -- | -0.69 | -- | -- | 0.102 | -- | 16.34 | 746 | -- | -- |
| 17.82 | 0.197 | 11.4 | -- | 0.208 | -0.318 | -- | -- | 0.00699 | 8.13 | 20.89 | 934 | -- | -- |
| 22.44 | 0.221 | 11.5 | 0.305 | -- | -- | -- | -- | -0.0129 | -- | -- | -- | -- | -- |
| 20.86 | 0.214 | 11.5 | -- | 0.267 | -- | -- | -- | -0.0489 | 8.69 | -- | -- | -- | -- |
| 19.05 | 0.203 | 11.4 | -- | -- | -0.455 | -- | -- | 0.0209 | -- | 20.8 | 727 | -- | -- |
| 24.89 | 0.233 | 11.5 | -- | -- | -- | -- | -- | -0.0467 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 11.80 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 2 | 11.89 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 9 |
| 3 | 11.90 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 5 | 11.90 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 7 |
| 14 | 11.92 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 22 |
| 27 | 11.98 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 33 | 12.00 | temperature | 20 | 1440 | > th | dose dependent | sin | 16 | NA |
| 39 | 12.01 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 63 | 12.06 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 179 | 12.18 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 195 | 12.18 | temperature | 20 | 720 | > th | dose dependent | rect. | 14 | 21 |
| 221 | 12.20 | temperature | 20 | 270 | > th | dose dependent | rect. | 19 | 22 |
| 231 | 12.21 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 22 |
| 253 | 12.23 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 294 | 12.24 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 23 |
| 315 | 12.25 | temperature | 10 | 270 | > th | dose dependent | rect. | 18 | 23 |
| 415 | 12.30 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 416 | 12.30 | temperature | 30 | 1440 | < th | dose dependent | sin | 17 | NA |
| 474 | 12.32 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 490 | 12.33 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 603 | 12.39 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 672 | 12.42 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 6 |
| 738 | 12.45 | temperature | 25 | 1440 | > th | dose independent | rect. | 16 | 6 |
| 808 | 12.47 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 18 |