BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0919500 Os01g0919500|AK059108
(241 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G07200.1 | chr3:2291343-2292223 FORWARD LENGTH=183 84 5e-17
AT5G48655.2 | chr5:19731575-19732486 REVERSE LENGTH=204 77 8e-15
AT1G18660.4 | chr1:6421433-6425489 FORWARD LENGTH=492 56 2e-08
AT3G27330.1 | chr3:10116950-10120516 REVERSE LENGTH=914 50 1e-06
AT3G16090.1 | chr3:5456513-5458694 FORWARD LENGTH=493 49 2e-06
AT4G03510.1 | chr4:1557905-1558654 REVERSE LENGTH=250 49 3e-06
AT5G05130.1 | chr5:1512173-1514918 FORWARD LENGTH=863 49 3e-06
AT2G32950.1 | chr2:13978000-13983282 FORWARD LENGTH=676 48 5e-06
>AT3G07200.1 | chr3:2291343-2292223 FORWARD LENGTH=183
Length = 182
Score = 84.3 bits (207), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 77/151 (50%), Gaps = 9/151 (5%)
Query: 95 ASSFPQVRQQAPRTEPVVTIEDDS---ETTPGQAGDAVDEHVDILLSLTLGRYPRHGHQR 151
A + PQ+ PR VV IEDD E+T A ++ + G R
Sbjct: 33 APTVPQIVATPPRIN-VVAIEDDDDVVESTASAFAQAKNKSRSARRGSQVVDVESAGANR 91
Query: 152 SSNISTSPVIHIIDTPSNALPEPEKAVP---KEPTFNCPVCMNELVEPSSTICGHIFCKQ 208
S+ + +D+ P KAV +EP F+CP+C+ + ST CGHIFCK+
Sbjct: 92 STRRRSDQTS--VDSVELNKPRKSKAVAPPVEEPKFSCPICLCPFTQEVSTKCGHIFCKK 149
Query: 209 CIKASIQAQKKCPTCRRKLTMNNFHRVYLPS 239
CIK ++ Q KCPTCR+K+T+ + RV+LP+
Sbjct: 150 CIKNALSLQAKCPTCRKKITVKDLIRVFLPT 180
>AT5G48655.2 | chr5:19731575-19732486 REVERSE LENGTH=204
Length = 203
Score = 77.0 bits (188), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 38/56 (67%)
Query: 184 FNCPVCMNELVEPSSTICGHIFCKQCIKASIQAQKKCPTCRRKLTMNNFHRVYLPS 239
F CP+CM E ST CGHIFCK CIK +I Q KCPTCR+K+T RV+LP+
Sbjct: 146 FTCPICMCPFTEEMSTKCGHIFCKGCIKMAISRQGKCPTCRKKVTAKELIRVFLPT 201
>AT1G18660.4 | chr1:6421433-6425489 FORWARD LENGTH=492
Length = 491
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 11/70 (15%)
Query: 171 LPEPEKAVP-----------KEPTFNCPVCMNELVEPSSTICGHIFCKQCIKASIQAQKK 219
L E EK +P + F+C VC+ L EP++T CGH FC+ C+ S+ K
Sbjct: 170 LQELEKVMPNSMRKTHGMAERSDDFDCTVCLKLLYEPATTPCGHTFCRSCLFQSMDRGNK 229
Query: 220 CPTCRRKLTM 229
CP CR + M
Sbjct: 230 CPLCRTVIFM 239
>AT3G27330.1 | chr3:10116950-10120516 REVERSE LENGTH=914
Length = 913
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Query: 184 FNCPVCMNELVEPSSTICGHIFCKQCIK-ASIQAQKKCPTCRR 225
+C +C+ EPS+T CGH FCK+C++ A+ + +KCP CR+
Sbjct: 722 LSCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGRKCPKCRQ 764
>AT3G16090.1 | chr3:5456513-5458694 FORWARD LENGTH=493
Length = 492
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 151 RSSNISTSPVIHIIDTPSNALPEPEKAVPKEPTFN---CPVCMNELVEPSSTICGHIFCK 207
R+ I S + SN A P+E T + C +C E+ ICGH+F
Sbjct: 254 RNFQIRVSDYLRYRKITSNMNDRFPDATPEELTASDATCIICREEMTNAKKLICGHLFHV 313
Query: 208 QCIKASIQAQKKCPTCR 224
C+++ ++ Q+ CPTCR
Sbjct: 314 HCLRSWLERQQTCPTCR 330
>AT4G03510.1 | chr4:1557905-1558654 REVERSE LENGTH=250
Length = 249
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 16/81 (19%)
Query: 172 PEP-EKAVPKEPT----FNCPVCMNELVEPSSTICGHIFCKQCIKASIQAQ--------- 217
PEP +VP + T F+C +C++ + EP T+CGH+FC CI + Q
Sbjct: 29 PEPITVSVPSDDTDDSNFDCNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFSTSDEYQ 88
Query: 218 --KKCPTCRRKLTMNNFHRVY 236
++CP C+ K++ + +Y
Sbjct: 89 RHRQCPVCKSKVSHSTLVPLY 109
>AT5G05130.1 | chr5:1512173-1514918 FORWARD LENGTH=863
Length = 862
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 151 RSSNISTSPVIHIIDTPSNALPEPEKAVPKEPTFNCPVCMNELVEPSSTICGHIFCKQCI 210
RS STS V + D P L + A+ F+CP+C++ T C HIFC+ CI
Sbjct: 583 RSFTTSTS-VEDVTDKPE-LLQKLVAALQDGEDFDCPICISPPTNIIITRCAHIFCRACI 640
Query: 211 KASIQAQK-KCPTCRRKLTMNNFH 233
++Q K CP CR LT ++ +
Sbjct: 641 LQTLQRSKPLCPLCRGSLTQSDLY 664
>AT2G32950.1 | chr2:13978000-13983282 FORWARD LENGTH=676
Length = 675
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 186 CPVCMNELVEPSSTICGHIFCKQCIKASIQAQKKCPTCRRKLTMNNFHRVYL 237
CP+CM + + T CGH FC CI ++ + CP C + LT N + +L
Sbjct: 52 CPICMQIIKDAFLTACGHSFCYMCIITHLRNKSDCPCCSQHLTNNQLYPNFL 103
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.129 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,973,590
Number of extensions: 195495
Number of successful extensions: 948
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 1017
Number of HSP's successfully gapped: 8
Length of query: 241
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 145
Effective length of database: 8,474,633
Effective search space: 1228821785
Effective search space used: 1228821785
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 110 (47.0 bits)