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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0504700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, RING-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.01 (0.0277) R2 : 0.0222
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.188 (0.0584) R2dN8 : 0.0287 R2N8 : 0.0222
σ : 0.523
deviance : 125.33
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
108.17 0.489 3.08 0.47 0.154 11.3 -0.373 22.7 0.232 5.68 1016 1564 -- --
119.72 0.51 3 0.351 0.0461 0.677 -0.354 -- 0.251 1.35 1011 1176 -- --
108.15 0.484 3.08 0.468 0.16 11.8 -- 23.7 0.241 6.36 1016 1550 -- --
118.56 0.507 3 0.328 0.175 0.671 -- -- 0.217 5.51 1011 760 -- --
108.97 0.486 3.1 0.536 -- 14.3 -- 29 0.248 -- 1016 1518 -- --
121.22 0.516 3 0.306 0.171 -- -0.211 -- 0.218 6.29 -- -- -- --
121.3 0.516 3 0.304 0.171 -- -- -- 0.219 6.77 -- -- -- --
119.84 0.51 3 0.357 -- 0.664 -- -- 0.25 -- 1011 831 -- --
121.53 0.513 3 -- 0.174 0.601 -- -- 0.211 6.42 1011 806 -- --
122.83 0.518 3 0.308 -- -- -- -- 0.222 -- -- -- -- --
123.74 0.52 3.01 -- 0.175 -- -- -- 0.185 6.66 -- -- -- --
123.12 0.517 3.01 -- -- 0.553 -- -- 0.207 -- 1011 795 -- --
125.33 0.523 3.01 -- -- -- -- -- 0.188 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 106.48 atmosphere 1015 1440 < th dose independent rect. 2 9
7 106.73 atmosphere 1015 1440 > th dose independent rect. 2 10
8 106.73 atmosphere 1015 1440 > th dose dependent rect. 2 9
13 106.76 atmosphere 1010 270 > th dose independent rect. 24 6
24 106.82 atmosphere 1010 270 > th dose dependent rect. 24 6
29 106.87 atmosphere 1010 270 > th dose independent rect. 5 1
40 106.87 atmosphere 1010 270 > th dose dependent rect. 5 1
51 106.91 atmosphere 1015 1440 > th dose independent rect. 10 1
66 106.91 atmosphere 1015 1440 > th dose dependent rect. 10 1
81 106.92 atmosphere 1015 1440 < th dose independent rect. 11 1
85 107.01 atmosphere 1015 1440 < th dose independent rect. 8 4
95 107.39 atmosphere 1010 90 > th dose dependent rect. 24 9
96 107.43 atmosphere 1010 90 > th dose dependent rect. 8 1
125 108.06 atmosphere 1015 1440 > th dose dependent sin 3 NA
259 108.50 radiation 20 90 < th dose independent rect. 8 2
321 109.64 wind 3 14400 < th dose dependent rect. 16 5
327 109.81 atmosphere 1015 1440 > th dose independent sin 3 NA
332 109.88 radiation 20 90 < th dose dependent rect. 8 2
336 109.93 wind 1 14400 > th dose independent rect. 15 6
349 110.09 wind 1 14400 > th dose independent rect. 16 3
389 110.34 atmosphere 1015 1440 < th dose independent sin 4 NA
420 110.37 wind 3 14400 > th dose independent rect. 18 2
460 110.46 wind 9 4320 > th dose independent rect. 4 7
465 110.54 wind 1 14400 < th dose independent rect. 16 3
469 110.59 wind 1 720 < th dose dependent rect. 17 1
484 110.71 wind 1 720 < th dose independent rect. 17 1
485 110.71 wind 9 4320 > th dose independent rect. 23 12
495 110.77 wind 9 4320 < th dose independent rect. 2 9
499 110.80 wind 3 14400 < th dose independent rect. 18 2
534 111.00 atmosphere 1015 1440 < th dose independent rect. 8 9
562 111.03 wind 1 14400 > th dose dependent rect. 18 2
594 111.09 wind 1 720 < th dose independent rect. 17 3
599 111.11 atmosphere 1005 43200 < th dose independent rect. 1 1
606 111.13 wind 7 4320 > th dose dependent rect. 4 7
634 111.21 wind 9 4320 < th dose independent rect. 23 12
635 111.22 humidity 80 14400 > th dose independent rect. 7 2
636 111.22 atmosphere 1005 43200 > th dose independent rect. 1 2
637 111.22 atmosphere 1005 43200 < th dose independent rect. 16 12
654 111.27 atmosphere 1005 43200 < th dose independent rect. 10 18
669 111.32 humidity 90 14400 < th dose independent rect. 6 2
708 111.39 humidity 80 14400 > th dose dependent rect. 7 1
722 111.42 atmosphere 1005 43200 < th dose independent sin 15 NA
729 111.44 atmosphere 1005 43200 > th dose independent rect. 15 14
764 111.50 atmosphere 1005 43200 > th dose independent rect. 10 19
773 111.53 atmosphere 1005 43200 < th dose independent rect. 11 3
775 111.53 atmosphere 1005 43200 < th dose independent rect. 10 6
785 111.54 humidity 80 14400 < th dose independent rect. 8 1
822 111.59 humidity 70 14400 > th dose independent rect. 18 17
824 111.60 humidity 90 14400 < th dose independent rect. 5 8
839 111.62 atmosphere 1005 43200 < th dose independent rect. 9 8
849 111.62 wind 9 4320 > th dose dependent rect. 23 12
875 111.67 atmosphere 1005 43200 > th dose independent sin 14 NA
895 111.68 humidity 80 14400 > th dose dependent rect. 6 3
905 111.69 temperature 20 270 < th dose dependent rect. 6 1
906 111.70 atmosphere 1005 43200 > th dose independent rect. 11 3
942 111.73 humidity 90 14400 < th dose independent rect. 5 21
945 111.74 atmosphere 1005 43200 > th dose independent rect. 11 1
954 111.75 humidity 90 14400 < th dose independent sin 3 NA
966 111.75 humidity 90 14400 < th dose independent rect. 16 21