BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0918500 Os01g0918500|AK072446
         (504 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0918500  Conserved hypothetical protein                      858   0.0  
Os02g0770100  Conserved hypothetical protein                      456   e-128

>Os01g0918500 Conserved hypothetical protein
          Length = 504

 Score =  858 bits (2218), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/447 (93%), Positives = 417/447 (93%)

Query: 58  PVEAERAPGDGGGGAVQEDLALPLGMSFAAVLAQVINTKNISGQRLHPDFLSKIYGDSSN 117
           PVEAERAPGDGGGGAVQEDLALPLGMSFAAVLAQVINTKNISGQRLHPDFLSKIYGDSSN
Sbjct: 58  PVEAERAPGDGGGGAVQEDLALPLGMSFAAVLAQVINTKNISGQRLHPDFLSKIYGDSSN 117

Query: 118 SFIKNFEKSFSSTFRTLHLVNEIPVNERSHIPECSFKHXXXXXXXXXXXXXXQNQTNRIE 177
           SFIKNFEKSFSSTFRTLHLVNEIPVNERSHIPECSFKH              QNQTNRIE
Sbjct: 118 SFIKNFEKSFSSTFRTLHLVNEIPVNERSHIPECSFKHDDSVAVDSLSSSDLQNQTNRIE 177

Query: 178 HDLVNTVESQLVLFASDNQQLTHLRHSRSSPEADNRILNAIDRSNELKEFEIGLTMRXXX 237
           HDLVNTVESQLVLFASDNQQLTHLRHSRSSPEADNRILNAIDRSNELKEFEIGLTMR   
Sbjct: 178 HDLVNTVESQLVLFASDNQQLTHLRHSRSSPEADNRILNAIDRSNELKEFEIGLTMRKLQ 237

Query: 238 XXXXXXXXXXXXXMLEKIKLSFGFQKASFKGEKFKTRMQETRDAEILRTLIDFLVSAVIV 297
                        MLEKIKLSFGFQKASFKGEKFKTRMQETRDAEILRTLIDFLVSAVIV
Sbjct: 238 LKQSQLALSSHSHMLEKIKLSFGFQKASFKGEKFKTRMQETRDAEILRTLIDFLVSAVIV 297

Query: 298 MSACFGYGTYIYSYQRITDVTSACSATSKGSKSWWMPNSVSNFSSGFLFLRCHVIAVTRM 357
           MSACFGYGTYIYSYQRITDVTSACSATSKGSKSWWMPNSVSNFSSGFLFLRCHVIAVTRM
Sbjct: 298 MSACFGYGTYIYSYQRITDVTSACSATSKGSKSWWMPNSVSNFSSGFLFLRCHVIAVTRM 357

Query: 358 CFGILMILAIAWLAFQRSSTTGSNMPITFNLILLGIICGFAGRFCTNTLGGDGNTWLMYW 417
           CFGILMILAIAWLAFQRSSTTGSNMPITFNLILLGIICGFAGRFCTNTLGGDGNTWLMYW
Sbjct: 358 CFGILMILAIAWLAFQRSSTTGSNMPITFNLILLGIICGFAGRFCTNTLGGDGNTWLMYW 417

Query: 418 EVLCSIHLLGNLFPSLLYHVLHGPISVSHREQVVWLPYWVRRCLFYAAVGLILPALTGLL 477
           EVLCSIHLLGNLFPSLLYHVLHGPISVSHREQVVWLPYWVRRCLFYAAVGLILPALTGLL
Sbjct: 418 EVLCSIHLLGNLFPSLLYHVLHGPISVSHREQVVWLPYWVRRCLFYAAVGLILPALTGLL 477

Query: 478 PFASLSDWKDHFVEEIKSIVIGDKIEA 504
           PFASLSDWKDHFVEEIKSIVIGDKIEA
Sbjct: 478 PFASLSDWKDHFVEEIKSIVIGDKIEA 504



>Os02g0770100 Conserved hypothetical protein
          Length = 544

 Score =  456 bits (1174), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 249/448 (55%), Positives = 306/448 (68%), Gaps = 29/448 (6%)

Query: 75  EDLALPLGMSFAAVLAQVINTKNISGQRLHPDFLSK------------IYGDSSNSFIKN 122
           +DLALPLGMSFAAVLAQV+N  + S  RL PDFLSK            IYGD  ++F KN
Sbjct: 96  QDLALPLGMSFAAVLAQVLNRSSCSEGRLQPDFLSKMCTSAVKESLTNIYGDRFDNFTKN 155

Query: 123 FEKSFSSTFRTLHLVNEIPVNERSHIPECSFKHXXXXXXXXXXXXXXQNQTNRIEHDL-- 180
           FEKSF ST RTLHL+NE PV E+ +     F H               ++  R  HD+  
Sbjct: 156 FEKSFGSTLRTLHLINETPVYEQDN---SRFSHEDGTSAAEIKLSGADSK--RPVHDIQE 210

Query: 181 ---VNTVESQLVLFASDNQQLTHLRHSRSSPEADNRILNAIDRS-------NELKEFEIG 230
              ++++++Q++L A  +QQL  L H+++SPE D  ILN  +RS       NELKE EIG
Sbjct: 211 STSLSSMDNQIILHAGTDQQLVKLPHNKASPEFDRHILNVFERSLNEQTRSNELKELEIG 270

Query: 231 LTMRXXXXXXXXXXXXXXXXMLEKIKLSFGFQKASFKGEKFKTRMQETRDAEILRTLIDF 290
           L MR                MLEKIK+S GFQKASF+ EKF+T+M++TR AE+LR LID 
Sbjct: 271 LNMRKLQLKQSQIALSSYSHMLEKIKISMGFQKASFREEKFRTQMEDTRHAELLRRLIDL 330

Query: 291 LVSAVIVMSACFGYGTYIYSYQRITDVTSACSATSKGSKSWWMPNSVSNFSSGFLFLRCH 350
           L++AV+ MS CFGYGTYIYSY+RIT VT+AC+A S+  KSWWMPNSVS F+SG LF RCH
Sbjct: 331 LLTAVVFMSVCFGYGTYIYSYKRITAVTAACAAASREPKSWWMPNSVSAFNSGLLFFRCH 390

Query: 351 VIAVTRMCFGILMILAIAWLAFQRSSTTGSNMPITFNLILLGIICGFAGRFCTNTLGGDG 410
           +IA TRM FG+LMIL IAWL FQRS+ TG NMPITFN++LLG++CG  GRFC +TLGGDG
Sbjct: 391 LIAATRMSFGMLMILLIAWLIFQRSAMTGPNMPITFNVMLLGVLCGSVGRFCVDTLGGDG 450

Query: 411 NTWLMYWEVLCSIHLLGNLFPSLLYHVLHGPISVSHREQVVWLPYWVRRCLFYAAVGLIL 470
           N WL +WE+LC IHL GN  PSLLY +L+GPISV+ R +   LPY V R  FY  + +IL
Sbjct: 451 NVWLFFWEILCFIHLFGNSRPSLLYRMLYGPISVTDRTKASDLPYRVCRYTFYTVLSVIL 510

Query: 471 PALTGLLPFASLSDWKDHFVEEIKSIVI 498
           P L GLLPFASLSDW +  VE +KS  I
Sbjct: 511 PCLAGLLPFASLSDWNELVVEYMKSKFI 538



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.137    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,964,210
Number of extensions: 550335
Number of successful extensions: 2052
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 2047
Number of HSP's successfully gapped: 2
Length of query: 504
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 399
Effective length of database: 11,553,331
Effective search space: 4609779069
Effective search space used: 4609779069
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 158 (65.5 bits)