BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0917300 Os01g0917300|J065179H19
         (125 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0917300  Conserved hypothetical protein                      176   5e-45
Os11g0463700  Penicillin-binding protein, transpeptidase fol...    83   6e-17

>Os01g0917300 Conserved hypothetical protein
          Length = 125

 Score =  176 bits (445), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 90/103 (87%), Positives = 90/103 (87%)

Query: 23  NCSATSQVGGAGEEVEVARMVPVVEGGGGFSAMVLNETRRRLGSFQLCAPCTCCXXXXXX 82
           NCSATSQVGGAGEEVEVARMVPVVEGGGGFSAMVLNETRRRLGSFQLCAPCTCC      
Sbjct: 23  NCSATSQVGGAGEEVEVARMVPVVEGGGGFSAMVLNETRRRLGSFQLCAPCTCCGGGGGG 82

Query: 83  XXXXXXXCILSPCCYAINCNIPNRPFGFCSFTPKSCDCLGCNL 125
                  CILSPCCYAINCNIPNRPFGFCSFTPKSCDCLGCNL
Sbjct: 83  GGSRGGGCILSPCCYAINCNIPNRPFGFCSFTPKSCDCLGCNL 125



>Os11g0463700 Penicillin-binding protein, transpeptidase fold domain containing
           protein
          Length = 124

 Score = 82.8 bits (203), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 47/98 (47%), Positives = 58/98 (59%), Gaps = 10/98 (10%)

Query: 28  SQVGGAGEEVEVARMVPVVEGGGGFSAMVLNETRRRLGSFQLCAPCTCCXXXXXXXXXXX 87
           +    AGE          VEGG   +A ++   RR +G FQ+CA CTCC           
Sbjct: 37  NDTAAAGEGWRPRLRKTYVEGG---AAGMVPRRRRLVGRFQICAVCTCCGGPHGV----- 88

Query: 88  XXCILSPCCYAINCNIPNRPFGFCSFTPKSCDCLGCNL 125
             CI +PCCYAINCNIPNRPFG CSFTP++C+CL C+L
Sbjct: 89  --CIPAPCCYAINCNIPNRPFGVCSFTPRTCNCLNCHL 124



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.327    0.141    0.494 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,611,908
Number of extensions: 119868
Number of successful extensions: 471
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 468
Number of HSP's successfully gapped: 4
Length of query: 125
Length of database: 17,035,801
Length adjustment: 88
Effective length of query: 37
Effective length of database: 12,440,969
Effective search space: 460315853
Effective search space used: 460315853
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 149 (62.0 bits)