BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0901300 Os01g0901300|AK100274
(224 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0901300 Conserved hypothetical protein 459 e-130
Os12g0190000 Similar to VTC2 301 3e-82
AK111215 210 8e-55
Os12g0612100 Conserved hypothetical protein 98 4e-21
>Os01g0901300 Conserved hypothetical protein
Length = 224
Score = 459 bits (1181), Expect = e-130, Method: Compositional matrix adjust.
Identities = 224/224 (100%), Positives = 224/224 (100%)
Query: 1 VSPIGYCHVLLIPRIQDCLPQRVDKESFLLAMYVASEAKDPFFRVGYNSLGGFATINHLH 60
VSPIGYCHVLLIPRIQDCLPQRVDKESFLLAMYVASEAKDPFFRVGYNSLGGFATINHLH
Sbjct: 1 VSPIGYCHVLLIPRIQDCLPQRVDKESFLLAMYVASEAKDPFFRVGYNSLGGFATINHLH 60
Query: 61 FQAYYLKVQYPVEKALTEKLTTLGNGVSIIQLVQYPVSGFVFEGGACLEDLSDVVSKVCI 120
FQAYYLKVQYPVEKALTEKLTTLGNGVSIIQLVQYPVSGFVFEGGACLEDLSDVVSKVCI
Sbjct: 61 FQAYYLKVQYPVEKALTEKLTTLGNGVSIIQLVQYPVSGFVFEGGACLEDLSDVVSKVCI 120
Query: 121 FLQENNKPFNALISESGKRVFLLPQCYAEKQALGRVSQEFLDMRINPAVWELSGHLVLKR 180
FLQENNKPFNALISESGKRVFLLPQCYAEKQALGRVSQEFLDMRINPAVWELSGHLVLKR
Sbjct: 121 FLQENNKPFNALISESGKRVFLLPQCYAEKQALGRVSQEFLDMRINPAVWELSGHLVLKR 180
Query: 181 RKDYDEASEATICRFLVEASLSESEFQELKSCILEFLSSAAPEE 224
RKDYDEASEATICRFLVEASLSESEFQELKSCILEFLSSAAPEE
Sbjct: 181 RKDYDEASEATICRFLVEASLSESEFQELKSCILEFLSSAAPEE 224
>Os12g0190000 Similar to VTC2
Length = 438
Score = 301 bits (770), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 140/219 (63%), Positives = 176/219 (80%), Gaps = 4/219 (1%)
Query: 1 VSPIGYCHVLLIPRIQDCLPQRVDKESFLLAMYVASEAKDPFFRVGYNSLGGFATINHLH 60
VSPI Y HVLLIPR+ D LPQR+D+ESFLLA+++A+EA P+FR+GYNSLG FATINHLH
Sbjct: 182 VSPIEYGHVLLIPRVLDRLPQRIDQESFLLALHMAAEAASPYFRLGYNSLGAFATINHLH 241
Query: 61 FQAYYLKVQYPVEKALTEKL----TTLGNGVSIIQLVQYPVSGFVFEGGACLEDLSDVVS 116
FQAYYL V +PVEKA T+++ T+ +GV + +L+ YPV G VFEGG L DL++VVS
Sbjct: 242 FQAYYLTVPFPVEKAATKRIFLAEGTMNSGVKVSKLMNYPVRGLVFEGGNSLSDLANVVS 301
Query: 117 KVCIFLQENNKPFNALISESGKRVFLLPQCYAEKQALGRVSQEFLDMRINPAVWELSGHL 176
CI+LQ+NN P+N LIS+ GK++FL PQCYAEKQALG VSQE LD ++NPAVWE+SGH+
Sbjct: 302 SACIWLQDNNVPYNVLISDCGKKIFLFPQCYAEKQALGEVSQELLDTQVNPAVWEISGHI 361
Query: 177 VLKRRKDYDEASEATICRFLVEASLSESEFQELKSCILE 215
VLKRR DY+EASEA+ R L E SLSE F+E+K+ I +
Sbjct: 362 VLKRRSDYEEASEASAWRLLAEVSLSEERFEEVKAYIFD 400
>AK111215
Length = 382
Score = 210 bits (534), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 103/215 (47%), Positives = 135/215 (62%), Gaps = 10/215 (4%)
Query: 1 VSPIGYCHVLLIPRIQDCLPQRVDKESFLLAMYVASEAKDPFFRVGYNSLGGFATINHLH 60
VSPI Y HVLL P++ DC+PQ + E+ L A++ A E +P+ RVG+NSLG FATINH H
Sbjct: 133 VSPIDYGHVLLCPKVLDCIPQPLTPETSLTALHFAVEVGNPYLRVGFNSLGAFATINHPH 192
Query: 61 FQAYYLKVQYPVEKALTEKLTTL---------GNGVSIIQLVQYPVSGFVFEGGACLEDL 111
FQAYYL P E+A T L+ + + V + +L YPV G+V EG + L +
Sbjct: 193 FQAYYLNAPMPCERAPTTPLSGMVKRRRPDSAADSVRLSKLCDYPVRGWVVEGSS-LAAM 251
Query: 112 SDVVSKVCIFLQENNKPFNALISESGKRVFLLPQCYAEKQALGRVSQEFLDMRINPAVWE 171
+ VV + C +Q +N P N LIS+ G RVF+ PQCYAE+QA G V LD +NPAVWE
Sbjct: 252 AQVVGEACQVMQAHNMPHNVLISDCGARVFIFPQCYAERQARGEVPDHLLDYGVNPAVWE 311
Query: 172 LSGHLVLKRRKDYDEASEATICRFLVEASLSESEF 206
++GH+VLKR +DY +EA L SLSE E
Sbjct: 312 ITGHMVLKRAEDYTTFTEAKAWELLAAVSLSEEEL 346
>Os12g0612100 Conserved hypothetical protein
Length = 368
Score = 98.2 bits (243), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 102/211 (48%), Gaps = 16/211 (7%)
Query: 3 PIGYCHVLLIPRIQDCLPQRVDKESFLLAMYVASEAKDPFFRVGYNSLGGFATINHLHFQ 62
P+ Y H+ L+P + L DK F L +ASE FRV ++S +H+ FQ
Sbjct: 161 PVEYGHIFLVPSATNQLSFFWDKRMFSLIARIASEVNSAAFRVFFDSCTS-TMPDHMFFQ 219
Query: 63 AYYLKVQYPVEKALTEKL--TTLGNGVSIIQLVQYPVSGFVFEGGACLEDLSDVVSKVCI 120
A Y PVE A T + + V + +++ YP+ V G + L++ VS+V +
Sbjct: 220 ACYFANPLPVESASTVAIYHGKATSAVHLYEIIDYPMKALVLTGKD-VNTLANFVSEVSL 278
Query: 121 FLQENNKPFNALISESGKRVFLLPQCYAEKQALGRVSQEFLDMRINPAVWELSGHLVLKR 180
L +NN ++ LIS +G +VFL PQ + A G + WE SG+ + +
Sbjct: 279 TLHDNNTAYSLLISNNGTKVFLFPQ--VKNLATGCCL----------SAWECSGYFIYRA 326
Query: 181 RKDYDEASEATICRFLVEASLSESEFQELKS 211
+ D+D ASE I + +L + F+ LK+
Sbjct: 327 KYDFDRASENEISNRMASVTLQDGAFENLKN 357
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.138 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,016,842
Number of extensions: 260046
Number of successful extensions: 461
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 455
Number of HSP's successfully gapped: 4
Length of query: 224
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 127
Effective length of database: 11,971,043
Effective search space: 1520322461
Effective search space used: 1520322461
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 154 (63.9 bits)