Os12g0612100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os12g0612100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 13.05 | 0.17 | 13.3 | 0.135 | 0.683 | -0.249 | 0.136 | -0.34 | -0.0328 | 1.87 | 40.58 | 1189 | -- | -- |
| 13.34 | 0.17 | 13.3 | 0.187 | 0.675 | -0.266 | 0.106 | -- | -0.0331 | 1.87 | 40.31 | 1190 | -- | -- |
| 13.11 | 0.169 | 13.3 | 0.134 | 0.682 | -0.251 | -- | -0.317 | -0.0322 | 1.87 | 40.67 | 1189 | -- | -- |
| 13.33 | 0.17 | 13.3 | 0.18 | 0.677 | -0.269 | -- | -- | -0.0137 | 1.79 | 40.36 | 1164 | -- | -- |
| 27.38 | 0.244 | 13.3 | 0.0784 | -- | -0.698 | -- | 0.443 | 0.0304 | -- | 42.21 | 375 | -- | -- |
| 17.06 | 0.194 | 13.4 | 0.126 | 0.633 | -- | 0.0592 | -- | -0.0909 | 2.2 | -- | -- | -- | -- |
| 17.07 | 0.194 | 13.4 | 0.124 | 0.633 | -- | -- | -- | -0.0913 | 2.19 | -- | -- | -- | -- |
| 25.29 | 0.234 | 13.3 | 0.158 | -- | -0.838 | -- | -- | -0.00824 | -- | 35.03 | 353 | -- | -- |
| 14.25 | 0.176 | 13.3 | -- | 0.675 | -0.28 | -- | -- | -0.0374 | 1.73 | 41.34 | 1128 | -- | -- |
| 40.99 | 0.299 | 13.3 | 0.15 | -- | -- | -- | -- | -0.0761 | -- | -- | -- | -- | -- |
| 17.48 | 0.196 | 13.4 | -- | 0.636 | -- | -- | -- | -0.105 | 2.2 | -- | -- | -- | -- |
| 25.94 | 0.237 | 13.3 | -- | -- | -0.869 | -- | -- | -0.0283 | -- | 35.59 | 328 | -- | -- |
| 41.59 | 0.301 | 13.4 | -- | -- | -- | -- | -- | -0.0928 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 13.33 | humidity | 50 | 4320 | > th | dose independent | rect. | 15 | 2 |
| 2 | 13.33 | humidity | 50 | 4320 | > th | dose independent | rect. | 15 | 5 |
| 4 | 13.33 | humidity | 50 | 4320 | > th | dose independent | rect. | 15 | 8 |
| 5 | 13.33 | humidity | 50 | 4320 | > th | dose independent | rect. | 15 | 10 |
| 18 | 13.38 | humidity | 50 | 4320 | < th | dose independent | rect. | 15 | 2 |
| 19 | 13.38 | radiation | 40 | 1440 | < th | dose independent | rect. | 8 | 2 |
| 22 | 13.39 | radiation | 40 | 1440 | < th | dose independent | rect. | 19 | 15 |
| 23 | 13.40 | humidity | 50 | 4320 | > th | dose independent | sin | 13 | NA |
| 37 | 13.40 | radiation | 40 | 1440 | < th | dose independent | rect. | 22 | 12 |
| 53 | 13.41 | radiation | 40 | 1440 | < th | dose independent | rect. | 24 | 10 |
| 60 | 13.42 | radiation | 40 | 1440 | > th | dose independent | rect. | 8 | 2 |
| 90 | 13.45 | humidity | 50 | 4320 | < th | dose independent | sin | 12 | NA |
| 125 | 13.59 | humidity | 60 | 4320 | < th | dose dependent | rect. | 15 | 4 |
| 150 | 13.62 | radiation | 40 | 1440 | < th | dose independent | sin | 11 | NA |
| 152 | 13.64 | radiation | 40 | 1440 | > th | dose independent | sin | 11 | NA |
| 155 | 13.65 | radiation | 20 | 1440 | > th | dose dependent | rect. | 15 | 19 |
| 160 | 13.68 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 164 | 13.68 | radiation | 20 | 1440 | > th | dose dependent | rect. | 7 | 3 |
| 180 | 13.69 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 278 | 13.74 | radiation | 40 | 1440 | > th | dose independent | rect. | 13 | 21 |
| 313 | 13.75 | radiation | 40 | 1440 | < th | dose dependent | rect. | 17 | 17 |
| 332 | 13.76 | radiation | 40 | 1440 | < th | dose independent | rect. | 13 | 21 |
| 335 | 13.76 | radiation | 30 | 1440 | > th | dose dependent | sin | 12 | NA |
| 411 | 13.80 | radiation | 40 | 1440 | < th | dose dependent | rect. | 5 | 5 |
| 412 | 13.80 | radiation | 40 | 1440 | < th | dose dependent | rect. | 22 | 12 |
| 538 | 13.85 | radiation | 30 | 1440 | > th | dose dependent | rect. | 13 | 21 |
| 588 | 13.88 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 16 |
| 596 | 13.88 | radiation | 40 | 270 | < th | dose dependent | rect. | 5 | 19 |
| 649 | 13.91 | radiation | 40 | 1440 | > th | dose independent | no | NA | NA |
| 650 | 13.91 | humidity | 60 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 825 | 13.92 | radiation | 40 | 1440 | < th | dose independent | no | NA | NA |
| 826 | 13.92 | humidity | 60 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 901 | 13.92 | radiation | 40 | 1440 | < th | dose independent | rect. | 24 | 20 |
| 941 | 13.92 | humidity | 50 | 4320 | < th | dose dependent | sin | 11 | NA |