BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0900200 Os01g0900200|AK071608
         (268 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0900200  Conserved hypothetical protein                      536   e-153
Os04g0489100  Lipase, class 3 family protein                       87   1e-17

>Os01g0900200 Conserved hypothetical protein
          Length = 268

 Score =  536 bits (1381), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 258/268 (96%), Positives = 258/268 (96%)

Query: 1   MNSIIXXXXXXXXXXSKDALPNSAKVGKLVAGIVRTKGYNRNVADHRQSTGALQIVNEAK 60
           MNSII          SKDALPNSAKVGKLVAGIVRTKGYNRNVADHRQSTGALQIVNEAK
Sbjct: 1   MNSIIRLRAAAVRALSKDALPNSAKVGKLVAGIVRTKGYNRNVADHRQSTGALQIVNEAK 60

Query: 61  LRNDQIHGNNLMHTIRGGVFLLGKAISCLVNTPKYRVSSTAAINYELGSRSRMNILGDRG 120
           LRNDQIHGNNLMHTIRGGVFLLGKAISCLVNTPKYRVSSTAAINYELGSRSRMNILGDRG
Sbjct: 61  LRNDQIHGNNLMHTIRGGVFLLGKAISCLVNTPKYRVSSTAAINYELGSRSRMNILGDRG 120

Query: 121 NCMAASCSVLDVPHFGEPSNACGNGKSSEDDLNECSREYRLPHSNDGTKLSIDPNDLRTI 180
           NCMAASCSVLDVPHFGEPSNACGNGKSSEDDLNECSREYRLPHSNDGTKLSIDPNDLRTI
Sbjct: 121 NCMAASCSVLDVPHFGEPSNACGNGKSSEDDLNECSREYRLPHSNDGTKLSIDPNDLRTI 180

Query: 181 SLPEGQSPEVYLPGLVIHLVPVKNHTSPFQKTPVTRHKSRKNKSYKAFIANRQDFMDLVV 240
           SLPEGQSPEVYLPGLVIHLVPVKNHTSPFQKTPVTRHKSRKNKSYKAFIANRQDFMDLVV
Sbjct: 181 SLPEGQSPEVYLPGLVIHLVPVKNHTSPFQKTPVTRHKSRKNKSYKAFIANRQDFMDLVV 240

Query: 241 TPRMFLDHLPWRCHYAMQRVIETRKRAC 268
           TPRMFLDHLPWRCHYAMQRVIETRKRAC
Sbjct: 241 TPRMFLDHLPWRCHYAMQRVIETRKRAC 268



>Os04g0489100 Lipase, class 3 family protein
          Length = 788

 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 40/82 (48%), Positives = 51/82 (62%), Gaps = 3/82 (3%)

Query: 186 QSPEVYLPGLVIHLVPVKNHTSPFQKTPVTRHKSRKNKSYKAFIANRQDFMDLVVTPRMF 245
           + PE++LPGLV+H+   +    P  K    +        YKAF A R++F DL VTP MF
Sbjct: 699 EPPEMFLPGLVVHIERQRRSLFPLWKCWSLQGS---EPPYKAFFAKRENFTDLAVTPSMF 755

Query: 246 LDHLPWRCHYAMQRVIETRKRA 267
            DHLPWRCHYAMQRV+E +  A
Sbjct: 756 TDHLPWRCHYAMQRVLEAQTAA 777



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.134    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,944,196
Number of extensions: 379036
Number of successful extensions: 784
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 783
Number of HSP's successfully gapped: 2
Length of query: 268
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 169
Effective length of database: 11,866,615
Effective search space: 2005457935
Effective search space used: 2005457935
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 155 (64.3 bits)