Os04g0489100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Lipase, class 3 family protein.
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Os04g0489100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Lipase, class 3 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 87.92 | 0.441 | 6.32 | -0.299 | 0.996 | -3.66 | 1.96 | -0.624 | -0.333 | 17.3 | 0.31 | 779 | -- | -- |
| 87.99 | 0.437 | 6.31 | -0.277 | 0.954 | -3.6 | 1.54 | -- | -0.323 | 17.2 | 0.3462 | 780 | -- | -- |
| 89.33 | 0.44 | 6.3 | -0.239 | 0.767 | -3.47 | -- | 1.69 | -0.301 | 17.7 | 0.3578 | 798 | -- | -- |
| 93 | 0.449 | 6.31 | -0.286 | 0.697 | -3.46 | -- | -- | -0.307 | 18.2 | 0.3599 | 819 | -- | -- |
| 91.43 | 0.445 | 6.29 | -0.287 | -- | -2.56 | -- | 1.71 | -0.322 | -- | 0.3566 | 826 | -- | -- |
| 116.17 | 0.505 | 6.28 | -0.588 | 1.76 | -- | -0.808 | -- | -0.452 | 6.54 | -- | -- | -- | -- |
| 117.75 | 0.508 | 6.28 | -0.599 | 1.76 | -- | -- | -- | -0.449 | 6.6 | -- | -- | -- | -- |
| 95.43 | 0.455 | 6.29 | -0.37 | -- | -2.55 | -- | -- | -0.332 | -- | 0.36 | 831 | -- | -- |
| 95.1 | 0.454 | 6.29 | -- | 0.712 | -3.49 | -- | -- | -0.278 | 18.2 | 0.32 | 821 | -- | -- |
| 278.46 | 0.78 | 6.31 | -0.556 | -- | -- | -- | -- | -0.413 | -- | -- | -- | -- | -- |
| 127.2 | 0.528 | 6.26 | -- | 1.75 | -- | -- | -- | -0.382 | 6.62 | -- | -- | -- | -- |
| 98.93 | 0.463 | 6.29 | -- | -- | -2.58 | -- | -- | -0.302 | -- | 0.31 | 831 | -- | -- |
| 286.63 | 0.79 | 6.3 | -- | -- | -- | -- | -- | -0.352 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 81.76 | temperature | 15 | 720 | > th | dose dependent | rect. | 15 | 4 |
| 5 | 82.18 | radiation | 1 | 720 | < th | dose dependent | rect. | 15 | 9 |
| 7 | 82.33 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 10 |
| 9 | 82.46 | temperature | 25 | 720 | < th | dose independent | rect. | 11 | 12 |
| 12 | 82.75 | temperature | 20 | 720 | > th | dose dependent | rect. | 16 | 2 |
| 27 | 83.12 | temperature | 25 | 720 | < th | dose independent | rect. | 13 | 9 |
| 38 | 83.29 | radiation | 1 | 720 | < th | dose dependent | rect. | 7 | 17 |
| 59 | 83.60 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 7 |
| 60 | 83.65 | radiation | 1 | 720 | < th | dose dependent | sin | 15 | NA |
| 61 | 83.65 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 12 |
| 85 | 84.03 | temperature | 25 | 720 | < th | dose independent | sin | 19 | NA |
| 88 | 84.14 | radiation | 1 | 720 | < th | dose independent | rect. | 15 | 9 |
| 100 | 84.29 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 4 |
| 119 | 84.52 | temperature | 25 | 720 | > th | dose independent | rect. | 14 | 6 |
| 121 | 84.52 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 17 |
| 124 | 84.55 | temperature | 30 | 720 | < th | dose dependent | sin | 18 | NA |
| 154 | 84.86 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 4 |
| 174 | 84.99 | temperature | 30 | 270 | < th | dose dependent | rect. | 16 | 14 |
| 242 | 85.81 | temperature | 25 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 255 | 85.93 | temperature | 25 | 270 | < th | dose dependent | rect. | 11 | 19 |
| 256 | 85.95 | temperature | 10 | 720 | > th | dose dependent | sin | 18 | NA |
| 258 | 85.97 | radiation | 1 | 720 | > th | dose independent | sin | 15 | NA |
| 260 | 85.99 | temperature | 20 | 720 | > th | dose dependent | sin | 17 | NA |
| 287 | 86.19 | temperature | 25 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 331 | 86.52 | temperature | 10 | 270 | > th | dose dependent | sin | 14 | NA |
| 332 | 86.53 | radiation | 1 | 720 | < th | dose independent | sin | 16 | NA |
| 338 | 86.55 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 13 |
| 342 | 86.58 | temperature | 30 | 270 | < th | dose dependent | sin | 14 | NA |
| 355 | 86.67 | radiation | 1 | 720 | < th | dose dependent | rect. | 3 | 21 |
| 428 | 87.04 | radiation | 1 | 720 | > th | dose independent | rect. | 7 | 22 |
| 430 | 87.08 | radiation | 1 | 720 | > th | dose independent | rect. | 7 | 12 |
| 497 | 87.39 | temperature | 25 | 10 | < th | dose dependent | rect. | 12 | 21 |
| 503 | 87.41 | radiation | 1 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 632 | 87.94 | temperature | 25 | 720 | > th | dose independent | sin | 19 | NA |
| 648 | 88.00 | temperature | 10 | 720 | > th | dose dependent | rect. | 9 | 16 |
| 794 | 88.48 | radiation | 1 | 720 | < th | dose independent | rect. | 3 | 21 |
| 885 | 88.84 | radiation | 1 | 720 | < th | dose dependent | rect. | 7 | 22 |
| 931 | 89.06 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 23 |
| 940 | 89.07 | radiation | 1 | 720 | < th | dose dependent | rect. | 13 | 17 |
| 998 | 89.28 | radiation | 1 | 720 | < th | dose independent | rect. | 1 | 23 |