BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0886600 Os01g0886600|AK070098
(496 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0886600 Similar to CLP protease regulatory subunit CLP... 872 0.0
Os05g0533900 Similar to CLP protease regulatory subunit CLP... 458 e-129
Os02g0293500 Similar to CLP protease regulatory subunit CLP... 209 5e-54
AK119847 101 2e-21
>Os01g0886600 Similar to CLP protease regulatory subunit CLPX precursor
Length = 496
Score = 872 bits (2252), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/438 (97%), Positives = 428/438 (97%)
Query: 59 TSAAPKREWWGGATLGEELPTPREMCRRLDEFVIGQGKAKKVLSVAVYNHYKRIYNATVQ 118
TSAAPKREWWGGATLGEELPTPREMCRRLDEFVIGQGKAKKVLSVAVYNHYKRIYNATVQ
Sbjct: 59 TSAAPKREWWGGATLGEELPTPREMCRRLDEFVIGQGKAKKVLSVAVYNHYKRIYNATVQ 118
Query: 119 KGCSTNSGWLDAASDDQNNIEIDKSNVLLMGPTGSGKTLLAKTLARIVNVPFIIADATSL 178
KGCSTNSGWLDAASDDQNNIEIDKSNVLLMGPTGSGKTLLAKTLARIVNVPFIIADATSL
Sbjct: 119 KGCSTNSGWLDAASDDQNNIEIDKSNVLLMGPTGSGKTLLAKTLARIVNVPFIIADATSL 178
Query: 179 TQAGYVGEDVESILQKLLVAAEYNVQAAQQGIVYIDEVDKITKKAESANVSRDVSGEGVQ 238
TQAGYVGEDVESILQKLLVAAEYNVQAAQQGIVYIDEVDKITKKAESANVSRDVSGEGVQ
Sbjct: 179 TQAGYVGEDVESILQKLLVAAEYNVQAAQQGIVYIDEVDKITKKAESANVSRDVSGEGVQ 238
Query: 239 QALLKILEGTVVSIPEKGSRKNSRNESIQIDTKDILFICGGAFVDLEKTISERRQDSSIG 298
QALLKILEGTVVSIPEKGSRKNSRNESIQIDTKDILFICGGAFVDLEKTISERRQDSSIG
Sbjct: 239 QALLKILEGTVVSIPEKGSRKNSRNESIQIDTKDILFICGGAFVDLEKTISERRQDSSIG 298
Query: 299 FGAPIRINMRSSEVTDPMVTSSLLESVESGDLARYGLIPEFIGRLPILVSLTALNEDQLV 358
FGAPIRINMRSSEVTDPMVTSSLLESVESGDLARYGLIPEFIGRLPILVSLTALNEDQLV
Sbjct: 299 FGAPIRINMRSSEVTDPMVTSSLLESVESGDLARYGLIPEFIGRLPILVSLTALNEDQLV 358
Query: 359 QVLTEPKNSLSRQYRKMFSLNKVKLHFTDGALRIVAKKAIARNTGARGLRAILESLLLEA 418
QVLTEPKNSLSRQYRKMFSLNKVKLHFTDGALRIVAKKAIARNTGARGLRAILESLLLEA
Sbjct: 359 QVLTEPKNSLSRQYRKMFSLNKVKLHFTDGALRIVAKKAIARNTGARGLRAILESLLLEA 418
Query: 419 MYEIPDEKTGSERXXXXXXXXXXIGSIDRPGCGAKILRGDGALEQYITNTNMKNSMEANE 478
MYEIPDEKTGSER IGSIDRPGCGAKILRGDGALEQYITNTNMKNSMEANE
Sbjct: 419 MYEIPDEKTGSERVDAVVVDEEAIGSIDRPGCGAKILRGDGALEQYITNTNMKNSMEANE 478
Query: 479 GLAGELEDAYMMSRFVSL 496
GLAGELEDAYMMSRFVSL
Sbjct: 479 GLAGELEDAYMMSRFVSL 496
>Os05g0533900 Similar to CLP protease regulatory subunit CLPX precursor
Length = 472
Score = 458 bits (1178), Expect = e-129, Method: Compositional matrix adjust.
Identities = 223/396 (56%), Positives = 294/396 (74%), Gaps = 3/396 (0%)
Query: 77 LPTPREMCRRLDEFVIGQGKAKKVLSVAVYNHYKRIYNATVQKGCSTNSGWL-DAASDDQ 135
PTP+E+ R LDEFV+GQ KAKKVL VAV+NHYKRIY+ + CS S D +
Sbjct: 23 FPTPKEIRRGLDEFVVGQDKAKKVLCVAVHNHYKRIYSES--SNCSMKSSACGDVSMSGD 80
Query: 136 NNIEIDKSNVLLMGPTGSGKTLLAKTLARIVNVPFIIADATSLTQAGYVGEDVESILQKL 195
++IE++KSN+LL+GPTGSGKTLLAKTLAR +VPF+IADAT++TQAGY GEDVESI+ L
Sbjct: 81 DDIELEKSNILLIGPTGSGKTLLAKTLARFADVPFVIADATAITQAGYSGEDVESIICNL 140
Query: 196 LVAAEYNVQAAQQGIVYIDEVDKITKKAESANVSRDVSGEGVQQALLKILEGTVVSIPEK 255
L AA++NV+A ++GIVYIDEVDK+ KK E RDVSGEGVQ ALLKI EGTV+++P K
Sbjct: 141 LAAAKFNVEATERGIVYIDEVDKLIKKVECNEDRRDVSGEGVQHALLKIFEGTVINVPRK 200
Query: 256 GSRKNSRNESIQIDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPIRINMRSSEVTDP 315
++ + + ++++TK+ILFICGG+F LEK +SER ++ +GFG P ++R+ T+
Sbjct: 201 RNQDSISDGYVEVNTKNILFICGGSFSGLEKIVSERHRNCHMGFGLPTSGDLRNCGWTNA 260
Query: 316 MVTSSLLESVESGDLARYGLIPEFIGRLPILVSLTALNEDQLVQVLTEPKNSLSRQYRKM 375
+ S +E++ES DL YGLIPEFIGRLPI V L L+E QLVQVL EPKN++ +QY+K+
Sbjct: 261 IGESCCVEAIESDDLIAYGLIPEFIGRLPITVGLNDLSEAQLVQVLMEPKNAIGKQYKKL 320
Query: 376 FSLNKVKLHFTDGALRIVAKKAIARNTGARGLRAILESLLLEAMYEIPDEKTGSERXXXX 435
F +N VKLHFT+ ALR++AKKA +R TGAR LR+I+E +L EAM+EIPD + G E+
Sbjct: 321 FKMNDVKLHFTENALRLIAKKAASRETGARELRSIMEDILTEAMFEIPDAREGKEKIIAV 380
Query: 436 XXXXXXIGSIDRPGCGAKILRGDGALEQYITNTNMK 471
+GS+ GCGAKI R DGALE Y+ N++
Sbjct: 381 LVDEESVGSVHSRGCGAKIFRDDGALELYVYQNNIR 416
>Os02g0293500 Similar to CLP protease regulatory subunit CLPX precursor
Length = 189
Score = 209 bits (531), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 104/186 (55%), Positives = 141/186 (75%), Gaps = 1/186 (0%)
Query: 312 VTDPMVTSSLLESVESGDLARYGLIPEFIGRLPILVSLTALNEDQLVQVLTEPKNSLSRQ 371
V + +TSSLLESVESGDL YGLIPEF+GR PILVSL++L+EDQLV+VLT+PKN+L RQ
Sbjct: 4 VINAEITSSLLESVESGDLIAYGLIPEFVGRFPILVSLSSLSEDQLVEVLTKPKNALGRQ 63
Query: 372 YRKMFSLNKVKLHFTDGALRIVAKKAIARNTGARGLRAILESLLLEAMYEIPDEKTGSER 431
Y K+F +N VKLHFT+ ALR+++K+AIA+NTGARGLR+ILESLL E+MYEIP+ +TG ++
Sbjct: 64 YTKLFEMNDVKLHFTEKALRLISKRAIAKNTGARGLRSILESLLTESMYEIPEIRTGKDK 123
Query: 432 XXXXXXXXXXIGSIDRPGCGAKILRGDGALEQYITNTNMKNSMEANEGLAGELE-DAYMM 490
+GS ++ G GAKIL G+GAL+ Y+ N ++++ +E + GE + D
Sbjct: 124 IDAVVVDEDSVGSTNQHGSGAKILCGEGALDLYLDEHNKESTLRRSEKVDGEPDIDTEAP 183
Query: 491 SRFVSL 496
SR S+
Sbjct: 184 SRVASM 189
>AK119847
Length = 737
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/242 (31%), Positives = 111/242 (45%), Gaps = 64/242 (26%)
Query: 187 DVESILQKLLVAAEYNVQAAQQGIVYIDEVDKI--TKKAESANVSRDVSGEGVQQALLKI 244
+VE L VA E A + GIV+IDE+DKI T K S +VS EGVQ+ LL I
Sbjct: 426 EVERALSSDRVAKEALRAAQEDGIVFIDEIDKIVDTSKGAGGATSSNVSSEGVQRDLLPI 485
Query: 245 LEGTVVSIPEKGSRKNSRNESIQIDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPIR 304
LEG+VV+ + + T+ +LFI GAF
Sbjct: 486 LEGSVVA-----------TKYGNVSTEHVLFIASGAF----------------------- 511
Query: 305 INMRSSEVTDPMVTSSLLESVESGDLARYGLIPEFIGRLPILVSLTALNEDQLVQVLTEP 364
S++ +D ++ E GRLP+ V L L + ++LTEP
Sbjct: 512 ---HSAKPSD--------------------MLAELQGRLPVRVELAGLTAEDFYRILTEP 548
Query: 365 KNSLSRQYRKMFSLNKVKLHFTDGALRIVAKKA-----IARNTGARGLRAILESLLLEAM 419
++++ RQ + + + + LHFTDGA+ VAK A + N GAR L +LE +L E
Sbjct: 549 QHNMLRQQKVLLATEGIDLHFTDGAVLAVAKAAEQANKLLDNIGARRLHTVLERVLAEVS 608
Query: 420 YE 421
++
Sbjct: 609 FD 610
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 71/121 (58%), Gaps = 18/121 (14%)
Query: 79 TPREMCRRLDEFVIGQGKAKKVLSVAVYNHYKRIYNATVQKGCSTNSGWLDAASDDQNNI 138
TP + ++LD+ ++GQ AK+ ++VA+ N ++R D A
Sbjct: 193 TPAAITQQLDKHIVGQAAAKRAVAVALRNRWRRHRLPP------------DIAE------ 234
Query: 139 EIDKSNVLLMGPTGSGKTLLAKTLARIVNVPFIIADATSLTQAGYVGEDVESILQKLLVA 198
EI N+L++GPTG GKT +A+ LA++V+ PF+ +AT T+ G+VG DV+ I++ L+ A
Sbjct: 235 EITPKNILMIGPTGCGKTEIARRLAKLVDAPFVKVEATKFTELGFVGRDVDEIVKDLMEA 294
Query: 199 A 199
+
Sbjct: 295 S 295
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.132 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,036,405
Number of extensions: 496363
Number of successful extensions: 1283
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1280
Number of HSP's successfully gapped: 5
Length of query: 496
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 391
Effective length of database: 11,553,331
Effective search space: 4517352421
Effective search space used: 4517352421
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 158 (65.5 bits)