Os05g0533900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to CLP protease regulatory subunit CLPX precursor.
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Os05g0533900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to CLP protease regulatory subunit CLPX precursor.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 87.2 | 0.439 | 8.49 | -1.41 | 0.399 | -0.622 | 0.192 | -0.491 | 0.0397 | 4.7 | 69 | 1285 | -- | -- |
| 87.44 | 0.436 | 8.48 | -1.35 | 0.401 | -0.661 | 0.2 | -- | 0.0543 | 4.32 | 69 | 1224 | -- | -- |
| 87.21 | 0.435 | 8.49 | -1.4 | 0.405 | -0.626 | -- | -0.409 | 0.0412 | 4.78 | 69.3 | 1257 | -- | -- |
| 87.53 | 0.436 | 8.48 | -1.35 | 0.402 | -0.648 | -- | -- | 0.0577 | 4.74 | 69 | 1250 | -- | -- |
| 91.76 | 0.446 | 8.48 | -1.45 | -- | -0.764 | -- | -0.701 | 0.0814 | -- | 71.24 | 1834 | -- | -- |
| 102.79 | 0.475 | 8.49 | -1.48 | 0.337 | -- | -0.433 | -- | 0.00406 | 6.53 | -- | -- | -- | -- |
| 103.13 | 0.476 | 8.49 | -1.48 | 0.339 | -- | -- | -- | 0.00461 | 6.03 | -- | -- | -- | -- |
| 92.5 | 0.448 | 8.48 | -1.37 | -- | -0.8 | -- | -- | 0.103 | -- | 71.06 | 1844 | -- | -- |
| 133.57 | 0.538 | 8.44 | -- | 0.411 | -0.842 | -- | -- | 0.221 | 4.86 | 70 | 1279 | -- | -- |
| 109.09 | 0.488 | 8.5 | -1.48 | -- | -- | -- | -- | 0.0123 | -- | -- | -- | -- | -- |
| 161.25 | 0.594 | 8.45 | -- | 0.318 | -- | -- | -- | 0.17 | 6.27 | -- | -- | -- | -- |
| 141.85 | 0.555 | 8.44 | -- | -- | -0.769 | -- | -- | 0.269 | -- | 70 | 1276 | -- | -- |
| 166.49 | 0.602 | 8.46 | -- | -- | -- | -- | -- | 0.176 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 82.99 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 10 |
| 3 | 83.57 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 4 |
| 13 | 84.73 | humidity | 70 | 1440 | > th | dose independent | rect. | 15 | 14 |
| 18 | 84.78 | humidity | 70 | 1440 | > th | dose independent | rect. | 15 | 8 |
| 25 | 84.84 | humidity | 70 | 1440 | > th | dose independent | sin | 13 | NA |
| 40 | 85.01 | temperature | 30 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 57 | 85.19 | humidity | 70 | 1440 | < th | dose independent | rect. | 15 | 5 |
| 69 | 85.21 | temperature | 30 | 14400 | < th | dose independent | rect. | 17 | 13 |
| 70 | 85.22 | temperature | 30 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 71 | 85.22 | temperature | 30 | 14400 | < th | dose independent | rect. | 17 | 11 |
| 75 | 85.23 | temperature | 30 | 14400 | < th | dose independent | rect. | 17 | 6 |
| 86 | 85.26 | humidity | 80 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 88 | 85.36 | temperature | 10 | 10 | > th | dose dependent | rect. | 5 | 15 |
| 93 | 85.48 | humidity | 70 | 1440 | < th | dose independent | sin | 14 | NA |
| 110 | 85.66 | humidity | 90 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 111 | 85.67 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 143 | 85.81 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 19 |
| 144 | 85.82 | humidity | 70 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 180 | 86.00 | temperature | 30 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 199 | 86.12 | humidity | 70 | 14400 | < th | dose independent | rect. | 18 | 13 |
| 207 | 86.22 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 10 |
| 209 | 86.22 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 11 |
| 226 | 86.33 | temperature | 30 | 14400 | > th | dose independent | sin | 13 | NA |
| 227 | 86.33 | humidity | 70 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 228 | 86.35 | temperature | 30 | 14400 | < th | dose independent | sin | 13 | NA |
| 229 | 86.35 | humidity | 70 | 14400 | < th | dose independent | rect. | 18 | 4 |
| 263 | 86.41 | radiation | 20 | 1440 | < th | dose dependent | rect. | 18 | 11 |
| 271 | 86.42 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 316 | 86.52 | temperature | 15 | 10 | > th | dose dependent | rect. | 20 | 9 |
| 317 | 86.53 | humidity | 80 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 329 | 86.61 | temperature | 30 | 14400 | < th | dose independent | rect. | 11 | 17 |
| 335 | 86.62 | temperature | 30 | 14400 | < th | dose independent | rect. | 11 | 8 |
| 385 | 86.64 | temperature | 30 | 14400 | > th | dose independent | rect. | 11 | 8 |
| 486 | 86.76 | humidity | 70 | 14400 | > th | dose independent | rect. | 18 | 13 |
| 489 | 86.76 | humidity | 80 | 1440 | < th | dose dependent | rect. | 18 | 2 |
| 492 | 86.77 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 14 |
| 496 | 86.80 | temperature | 30 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 505 | 86.82 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 5 |
| 521 | 86.86 | temperature | 25 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 533 | 86.88 | temperature | 30 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 566 | 86.93 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 572 | 86.95 | humidity | 70 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 576 | 86.96 | humidity | 70 | 14400 | > th | dose independent | rect. | 18 | 9 |
| 591 | 86.97 | temperature | 30 | 14400 | > th | dose dependent | sin | 12 | NA |
| 606 | 86.98 | humidity | 70 | 14400 | > th | dose independent | rect. | 18 | 5 |
| 615 | 87.00 | wind | 1 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 642 | 87.03 | humidity | 70 | 14400 | > th | dose independent | rect. | 18 | 2 |
| 655 | 87.04 | temperature | 25 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 723 | 87.17 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 23 |
| 729 | 87.18 | temperature | 30 | 14400 | < th | dose independent | rect. | 2 | 17 |
| 743 | 87.18 | temperature | 30 | 14400 | < th | dose independent | rect. | 21 | 22 |
| 747 | 87.19 | temperature | 30 | 14400 | < th | dose independent | no | NA | NA |
| 826 | 87.20 | temperature | 30 | 14400 | > th | dose independent | rect. | 15 | 22 |
| 836 | 87.22 | temperature | 30 | 14400 | > th | dose independent | no | NA | NA |
| 1000 | 87.30 | humidity | 70 | 14400 | < th | dose dependent | rect. | 17 | 2 |