Os01g0886600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to CLP protease regulatory subunit CLPX precursor.
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Os01g0886600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to CLP protease regulatory subunit CLPX precursor.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45.86 | 0.318 | 7.59 | 0.367 | 0.648 | 1.21 | -0.523 | -8.18 | -0.307 | 21.1 | 29.8 | 4063 | -- | -- |
| 51.49 | 0.337 | 7.75 | -1.11 | 0.593 | 0.337 | -0.394 | -- | -0.402 | 20.9 | 18.7 | 14975 | -- | -- |
| 46.82 | 0.319 | 7.59 | 0.368 | 0.65 | 1.2 | -- | -8.08 | -0.308 | 21.1 | 29.75 | 4063 | -- | -- |
| 49.1 | 0.326 | 7.72 | -0.896 | 0.619 | 0.448 | -- | -- | -0.263 | 21.2 | 22.21 | 6590 | -- | -- |
| 70.1 | 0.39 | 7.59 | 0.232 | -- | 1.13 | -- | -7.8 | -0.406 | -- | 29.91 | 4264 | -- | -- |
| 53.54 | 0.343 | 7.76 | -1.19 | 0.608 | -- | -0.488 | -- | -0.432 | 21.1 | -- | -- | -- | -- |
| 54.37 | 0.345 | 7.76 | -1.17 | 0.611 | -- | -- | -- | -0.432 | 21 | -- | -- | -- | -- |
| 67.35 | 0.384 | 7.72 | -1.07 | -- | 0.36 | -- | -- | -0.331 | -- | 22.21 | 6590 | -- | -- |
| 50.58 | 0.331 | 7.69 | -- | 0.613 | 1.01 | -- | -- | -0.0633 | 21.1 | 19.1 | 38969 | -- | -- |
| 75.82 | 0.407 | 7.75 | -1.17 | -- | -- | -- | -- | -0.435 | -- | -- | -- | -- | -- |
| 90.71 | 0.446 | 7.73 | -- | 0.613 | -- | -- | -- | -0.301 | 20.9 | -- | -- | -- | -- |
| 72.09 | 0.395 | 7.66 | -- | -- | 1.06 | -- | -- | -0.0717 | -- | 18.45 | 36140 | -- | -- |
| 112.14 | 0.494 | 7.72 | -- | -- | -- | -- | -- | -0.305 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.46 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 10 |
| 8 | 41.15 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 18 |
| 36 | 42.44 | temperature | 10 | 90 | > th | dose dependent | rect. | 9 | 20 |
| 42 | 42.58 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 45 | 42.65 | temperature | 15 | 270 | > th | dose independent | rect. | 17 | 10 |
| 51 | 42.75 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 4 |
| 57 | 42.90 | temperature | 10 | 720 | > th | dose dependent | rect. | 9 | 11 |
| 60 | 42.92 | temperature | 10 | 270 | > th | dose dependent | rect. | 8 | 18 |
| 68 | 43.01 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 2 |
| 86 | 43.37 | temperature | 15 | 10 | > th | dose dependent | rect. | 20 | 9 |
| 153 | 43.91 | radiation | 1 | 720 | < th | dose dependent | rect. | 15 | 9 |
| 203 | 44.25 | temperature | 30 | 720 | < th | dose dependent | rect. | 12 | 6 |
| 228 | 44.40 | temperature | 30 | 720 | < th | dose dependent | rect. | 10 | 14 |
| 233 | 44.42 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 11 |
| 234 | 44.43 | temperature | 15 | 10 | > th | dose independent | rect. | 9 | 21 |
| 278 | 44.60 | temperature | 10 | 270 | > th | dose dependent | rect. | 16 | 21 |
| 300 | 44.69 | temperature | 30 | 720 | < th | dose dependent | sin | 20 | NA |
| 348 | 44.86 | temperature | 25 | 720 | > th | dose independent | rect. | 16 | 3 |
| 355 | 44.88 | radiation | 1 | 720 | < th | dose independent | rect. | 15 | 9 |
| 385 | 44.97 | radiation | 1 | 720 | < th | dose dependent | rect. | 7 | 17 |
| 395 | 45.01 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 2 |
| 406 | 45.03 | temperature | 15 | 720 | > th | dose dependent | sin | 20 | NA |
| 513 | 45.27 | temperature | 15 | 270 | > th | dose independent | rect. | 7 | 20 |
| 559 | 45.38 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 1 |
| 576 | 45.41 | temperature | 25 | 720 | < th | dose independent | rect. | 8 | 16 |
| 598 | 45.45 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 13 |
| 623 | 45.49 | temperature | 20 | 10 | > th | dose independent | rect. | 18 | 11 |
| 628 | 45.50 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 9 |
| 657 | 45.55 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 15 |
| 667 | 45.57 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 17 |
| 698 | 45.63 | temperature | 15 | 720 | > th | dose independent | rect. | 15 | 6 |
| 798 | 45.80 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 20 |
| 804 | 45.81 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 2 |
| 812 | 45.81 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 10 |
| 825 | 45.81 | wind | 9 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 842 | 45.84 | temperature | 25 | 720 | < th | dose independent | sin | 20 | NA |
| 855 | 45.86 | wind | 5 | 14400 | > th | dose dependent | rect. | 9 | 6 |
| 887 | 45.91 | temperature | 30 | 90 | < th | dose independent | rect. | 14 | 19 |
| 907 | 45.94 | temperature | 25 | 720 | > th | dose independent | sin | 20 | NA |
| 966 | 46.01 | wind | 5 | 14400 | > th | dose dependent | rect. | 12 | 3 |
| 976 | 46.03 | wind | 9 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 998 | 46.06 | wind | 7 | 14400 | < th | dose independent | rect. | 8 | 8 |