BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0885200 Os01g0885200|AK100276
         (397 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0885200  Conserved hypothetical protein                      723   0.0  
Os04g0443700  Conserved hypothetical protein                      218   6e-57

>Os01g0885200 Conserved hypothetical protein
          Length = 397

 Score =  723 bits (1865), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/397 (91%), Positives = 362/397 (91%)

Query: 1   MPLTREAADAFGVATITLFAIFAVLGLFCIFQSIYFRFRIRRGAFIPLGYFNGPWVTRIV 60
           MPLTREAADAFGVATITLFAIFAVLGLFCIFQSIYFRFRIRRGAFIPLGYFNGPWVTRIV
Sbjct: 1   MPLTREAADAFGVATITLFAIFAVLGLFCIFQSIYFRFRIRRGAFIPLGYFNGPWVTRIV 60

Query: 61  LILITIWWGVGEIVRLSFLKRKLFSSILLQKGVCDAYILSNLGFAEPSIFFAFAFLLHGS 120
           LILITIWWGVGEIVRLSFLKRKLFSSILLQKGVCDAYILSNLGFAEPSIFFAFAFLLHGS
Sbjct: 61  LILITIWWGVGEIVRLSFLKRKLFSSILLQKGVCDAYILSNLGFAEPSIFFAFAFLLHGS 120

Query: 121 LQKRELGTLNQRWNWKTIGYMLVFCVPVFFVQALLVFVGPTFVKDENNTHGRKKIAKYFI 180
           LQKRELGTLNQRWNWKTIGYMLVFCVPVFFVQALLVFVGPTFVKDENNTHGRKKIAKYFI
Sbjct: 121 LQKRELGTLNQRWNWKTIGYMLVFCVPVFFVQALLVFVGPTFVKDENNTHGRKKIAKYFI 180

Query: 181 RTSMPVGDTNICTYPLFGTIFLGLIDAILMSYVSYVGSRVLSLVINKAXXXXXXXXXXXX 240
           RTSMPVGDTNICTYPLFGTIFLGLIDAILMSYVSYVGSRVLSLVINKA            
Sbjct: 181 RTSMPVGDTNICTYPLFGTIFLGLIDAILMSYVSYVGSRVLSLVINKALRRRVSLLMLSV 240

Query: 241 XXXXPIRVLLLGFSVLPQPGDVAFEVIIFLSFLMMISCTTVGVLLLVYYPVADSLALREI 300
               PIRVLLLGFSVLPQPGDVAFEVIIFLSFLMMISCTTVGVLLLVYYPVADSLALREI
Sbjct: 241 LFFLPIRVLLLGFSVLPQPGDVAFEVIIFLSFLMMISCTTVGVLLLVYYPVADSLALREI 300

Query: 301 GQREITEMVPYDDYYYEGASLVANQSFREIERNSDTSTKRGSISFRTMIREDQLQQDGVD 360
           GQREITEMVPYDDYYYEGASLVANQSFREIERNSDTSTKRGSISFRTMIREDQLQQDGVD
Sbjct: 301 GQREITEMVPYDDYYYEGASLVANQSFREIERNSDTSTKRGSISFRTMIREDQLQQDGVD 360

Query: 361 EIGFSSRSGAHIXXXXXXXXXXXXXXXXXXXKEVPRY 397
           EIGFSSRSGAHI                   KEVPRY
Sbjct: 361 EIGFSSRSGAHIGSPSPSGSSPSAAMPMLPLKEVPRY 397



>Os04g0443700 Conserved hypothetical protein
          Length = 318

 Score =  218 bits (555), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 126/308 (40%), Positives = 185/308 (60%), Gaps = 15/308 (4%)

Query: 8   ADAFGVATITLFAIFAVLGLFCIFQSIYFRFRIRR-------GAFIPLGYFNGPWVTRIV 60
            +  GV TI L +I ++LGL C+  S+ F+  I+R            L YFNGPW+TRI 
Sbjct: 8   TNIIGVVTIVLISIVSILGLICLCHSLNFQLLIKRRRRNYYQANDEQLSYFNGPWLTRIT 67

Query: 61  LILITIWWGVGEIVRLSFL--KRKLFSSILLQKGVCDAYILSNLGFAEPSIFFAFAFLLH 118
           LIL+ +WWGVGE++RL+F+  + +  S    Q  VC  YI+SNLGFAEP +F   AFLL 
Sbjct: 68  LILVALWWGVGEVLRLTFVNGEGRFISDQTWQANVCKFYIVSNLGFAEPGLFLLLAFLLS 127

Query: 119 GSLQKRELGTLNQRWNWKTIGYMLVFCVPVFFVQALLVFVGPTFVKDENNTHGRKKIAKY 178
            +LQ +E+G LN++WN +TI  + + C P    +A +VF+GP    ++  T    K+AKY
Sbjct: 128 AALQNQEVGALNRKWNQRTICAVFMLCSPSLIWEACVVFIGPHIASNDGQT---SKVAKY 184

Query: 179 FIRTSMPVGDTNI-CTYPLFGTIFLGLIDAILMSYVSYVGSRVLSLVINKAXXXXXXXXX 237
           +   S  V D ++ CTYPL  +IFLG    +L  YV +VG ++LSLVINK          
Sbjct: 185 WYSAS-SVHDGDVACTYPLLSSIFLGTFYTVLTLYVIFVGGQILSLVINKGLRRRIYMLI 243

Query: 238 XXXXXXXPIRVLLLGFSVLPQPGDVAFEVIIFLSFLMMISCTTVGVLLLVYYPVADSLAL 297
                  P R + LGFSVLP PG++  E ++F+SFL+++    +G+++LVY+PVA++  +
Sbjct: 244 FATGILLP-RAMFLGFSVLPWPGEIVHESLVFVSFLVLMIAAMLGIVILVYFPVAETFEV 302

Query: 298 REIGQREI 305
           R     E+
Sbjct: 303 RNQEHIEL 310



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.330    0.145    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,628,243
Number of extensions: 383540
Number of successful extensions: 915
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 910
Number of HSP's successfully gapped: 2
Length of query: 397
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 294
Effective length of database: 11,657,759
Effective search space: 3427381146
Effective search space used: 3427381146
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 157 (65.1 bits)