Os04g0443700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0443700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.13 | 0.266 | 9.15 | 1.07 | 0.592 | -0.377 | 0.246 | 1.19 | 0.391 | 4.16 | 21.94 | 3290 | -- | -- |
| 33.1 | 0.268 | 9.18 | 1.1 | 0.637 | -0.685 | 0.294 | -- | 0.399 | 4.37 | 19.7 | 21300 | -- | -- |
| 32.18 | 0.264 | 9.15 | 1.09 | 0.595 | -0.384 | -- | 1.23 | 0.408 | 4.13 | 22.3 | 3272 | -- | -- |
| 32.66 | 0.266 | 9.18 | 1.22 | 0.608 | -0.793 | -- | -- | 0.383 | 4.21 | 18.8 | 22697 | -- | -- |
| 51.33 | 0.334 | 9.15 | 1.1 | -- | -0.376 | -- | 1.19 | 0.421 | -- | 22.4 | 3271 | -- | -- |
| 40.55 | 0.299 | 9.23 | 0.471 | 0.583 | -- | 0.265 | -- | 0.143 | 4.25 | -- | -- | -- | -- |
| 40.74 | 0.299 | 9.23 | 0.469 | 0.585 | -- | -- | -- | 0.142 | 4.29 | -- | -- | -- | -- |
| 51.81 | 0.335 | 9.19 | 1.2 | -- | -0.714 | -- | -- | 0.379 | -- | 18.8 | 21976 | -- | -- |
| 44.39 | 0.31 | 9.23 | -- | 0.589 | -0.217 | -- | -- | 0.174 | 4.14 | 22.9 | 2488 | -- | -- |
| 59.21 | 0.36 | 9.24 | 0.492 | -- | -- | -- | -- | 0.157 | -- | -- | -- | -- | -- |
| 46.53 | 0.319 | 9.25 | -- | 0.594 | -- | -- | -- | 0.0897 | 4.27 | -- | -- | -- | -- |
| 63.04 | 0.371 | 9.24 | -- | -- | -0.179 | -- | -- | 0.165 | -- | 23.24 | 6126 | -- | -- |
| 65.59 | 0.378 | 9.25 | -- | -- | -- | -- | -- | 0.103 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.00 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 2 | 13 |
| 2 | 30.07 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 3 | 11 |
| 6 | 30.21 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 5 | 8 |
| 7 | 30.24 | temperature | 20.0 | 720 | > th | dose dependent | sin | 4 | NA |
| 13 | 30.46 | temperature | 20.0 | 720 | < th | dose independent | rect. | 4 | 4 |
| 19 | 30.59 | temperature | 20.0 | 720 | < th | dose independent | rect. | 5 | 2 |
| 21 | 30.61 | temperature | 30.0 | 720 | < th | dose dependent | sin | 3 | NA |
| 23 | 30.63 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 1 | 16 |
| 27 | 30.69 | temperature | 20.0 | 720 | > th | dose independent | rect. | 5 | 3 |
| 28 | 30.72 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 1 | 14 |
| 35 | 30.80 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 5 | 8 |
| 63 | 31.02 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 5 | 6 |
| 96 | 31.22 | temperature | 20.0 | 720 | > th | dose independent | rect. | 5 | 1 |
| 105 | 31.26 | temperature | 25.0 | 270 | < th | dose independent | rect. | 10 | 3 |
| 109 | 31.27 | temperature | 25.0 | 270 | < th | dose independent | rect. | 9 | 5 |
| 115 | 31.33 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 127 | 31.35 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 128 | 31.35 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 133 | 31.38 | radiation | 30.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 151 | 31.40 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 22 | 4 |
| 160 | 31.43 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 4 | 5 |
| 193 | 31.50 | radiation | 30.0 | 14400 | > th | dose dependent | rect. | 16 | 16 |
| 202 | 31.53 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 17 | 11 |
| 203 | 31.54 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 18 | 10 |
| 217 | 31.58 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 220 | 31.59 | radiation | 30.0 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 247 | 31.62 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 13 | NA |
| 251 | 31.62 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 17 | 14 |
| 258 | 31.63 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 9 | 2 |
| 275 | 31.65 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 21 | 6 |
| 313 | 31.69 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 9 | 6 |
| 324 | 31.70 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 18 | 3 |
| 334 | 31.71 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 5 |
| 340 | 31.72 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 356 | 31.73 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 18 | 10 |
| 426 | 31.81 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 17 | 15 |
| 456 | 31.84 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 457 | 31.84 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 10 | 4 |
| 472 | 31.86 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 473 | 31.86 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 475 | 31.86 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 5 | 6 |
| 480 | 31.87 | humidity | 90.0 | 14400 | > th | dose independent | sin | 12 | NA |
| 500 | 31.88 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 3 | 4 |
| 504 | 31.88 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 5 | 17 |
| 507 | 31.89 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 508 | 31.89 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 21 | 4 |
| 512 | 31.89 | temperature | 20.0 | 720 | > th | dose independent | rect. | 2 | 15 |
| 516 | 31.89 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 5 | 2 |
| 519 | 31.89 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 5 | 7 |
| 530 | 31.90 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 5 | 6 |
| 537 | 31.90 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 20 | 12 |
| 548 | 31.91 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 24 | 8 |
| 561 | 31.92 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 12 | 1 |
| 580 | 31.93 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 4 | 1 |
| 600 | 31.94 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 7 | 2 |
| 628 | 31.96 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 12 | 1 |
| 668 | 31.98 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 11 | 2 |
| 679 | 31.99 | temperature | 20.0 | 720 | < th | dose independent | sin | 4 | NA |
| 747 | 32.04 | temperature | 20.0 | 720 | > th | dose independent | rect. | 3 | 13 |
| 752 | 32.04 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 18 | 3 |
| 767 | 32.04 | radiation | 1.0 | 14400 | > th | dose dependent | rect. | 18 | 11 |
| 777 | 32.05 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 783 | 32.05 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 18 | 14 |
| 824 | 32.08 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 17 | 13 |
| 853 | 32.10 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 10 | 5 |
| 876 | 32.11 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 10 | 6 |
| 922 | 32.13 | humidity | 90.0 | 14400 | < th | dose independent | sin | 13 | NA |
| 924 | 32.13 | wind | 7.0 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 933 | 32.13 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 21 |
| 992 | 32.16 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 21 |