BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0884700 Os01g0884700|Os01g0884700
(270 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0884700 Conserved hypothetical protein 367 e-102
Os02g0558500 Conserved hypothetical protein 88 8e-18
>Os01g0884700 Conserved hypothetical protein
Length = 270
Score = 367 bits (941), Expect = e-102, Method: Compositional matrix adjust.
Identities = 200/270 (74%), Positives = 200/270 (74%)
Query: 1 MDGEAADLNDWELLLTSPTXXXXXXXXXXXXXXXXXXXXXIKYDYFELGSDVKYPERVSF 60
MDGEAADLNDWELLLTSPT IKYDYFELGSDVKYPERVSF
Sbjct: 1 MDGEAADLNDWELLLTSPTAADEAAAAETRDGGGDDEAGAIKYDYFELGSDVKYPERVSF 60
Query: 61 SKXXXXXXXXXXXXXVASGNASWVEPDPDDLVFPGPDRAALWSDSSDDGERRXXXXXXXX 120
SK VASGNASWVEPDPDDLVFPGPDRAALWSDSSDDGERR
Sbjct: 61 SKELEEEGEGEEEEGVASGNASWVEPDPDDLVFPGPDRAALWSDSSDDGERREEAEATEP 120
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXRWWHLPMGVLRAWALRAARSVWSLPVAVALLG 180
RWWHLPMGVLRAWALRAARSVWSLPVAVALLG
Sbjct: 121 LPVEAAAAEVEAGEGAVTKGGGAGAGVVRWWHLPMGVLRAWALRAARSVWSLPVAVALLG 180
Query: 181 IAVLGRRLYRMRRQSKAVARVRLVLDEKKASQFKAQASRLNESFPMARRAPIMKPLLPAN 240
IAVLGRRLYRMRRQSKAVARVRLVLDEKKASQFKAQASRLNESFPMARRAPIMKPLLPAN
Sbjct: 181 IAVLGRRLYRMRRQSKAVARVRLVLDEKKASQFKAQASRLNESFPMARRAPIMKPLLPAN 240
Query: 241 GVTPWPEIICKEKTNSKEMRNMQILEVLQL 270
GVTPWPEIICKEKTNSKEMRNMQILEVLQL
Sbjct: 241 GVTPWPEIICKEKTNSKEMRNMQILEVLQL 270
>Os02g0558500 Conserved hypothetical protein
Length = 353
Score = 87.8 bits (216), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 65/96 (67%), Gaps = 3/96 (3%)
Query: 150 WWHLPMGVLRAWALRAARSVWSLPVAVALLGIAVLGRRLYRMRRQSKAVARVRLVLDEKK 209
WW LP +L+ A + + +WS +A ALLG+ VLGRR+YRMRR+++ + +++ D+K+
Sbjct: 257 WWRLPFRLLQCCAWKV-KPIWSFSIAAALLGLFVLGRRMYRMRRKARGLPHIKIAFDDKR 315
Query: 210 ASQFKAQASRLNESFPMARRAPIMKPLLPANGVTPW 245
ASQF + +RLNE+F +AR P+++ + V PW
Sbjct: 316 ASQFADRTARLNEAFFVARHIPMLR--TSSGAVFPW 349
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.133 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,230,617
Number of extensions: 229544
Number of successful extensions: 494
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 492
Number of HSP's successfully gapped: 2
Length of query: 270
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 171
Effective length of database: 11,866,615
Effective search space: 2029191165
Effective search space used: 2029191165
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)