Os01g0884700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0884700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 95.43 | 0.459 | 9.52 | 1.36 | 2.2 | -1.62 | 0.386 | 0.508 | 0.306 | 10.5 | 17.7 | 515 | -- | -- |
| 95.59 | 0.455 | 9.53 | 1.27 | 2.2 | -1.67 | 0.355 | -- | 0.28 | 10.5 | 16.91 | 516 | -- | -- |
| 96 | 0.456 | 9.53 | 1.33 | 2.2 | -1.63 | -- | 0.287 | 0.296 | 10.5 | 17.5 | 517 | -- | -- |
| 96.05 | 0.456 | 9.53 | 1.28 | 2.19 | -1.65 | -- | -- | 0.281 | 10.4 | 17.07 | 525 | -- | -- |
| 324.77 | 0.839 | 9.56 | 1.69 | -- | -3.09 | -- | 0.208 | 0.49 | -- | 17.01 | 736 | -- | -- |
| 135.05 | 0.545 | 9.58 | 0.85 | 2.52 | -- | 0.436 | -- | 0.00331 | 9.82 | -- | -- | -- | -- |
| 135.77 | 0.546 | 9.58 | 0.866 | 2.52 | -- | -- | -- | 0.00402 | 9.81 | -- | -- | -- | -- |
| 324.42 | 0.839 | 9.54 | 1.69 | -- | -3.09 | -- | -- | 0.52 | -- | 17 | 734 | -- | -- |
| 133.87 | 0.539 | 9.57 | -- | 2.23 | -1.1 | -- | -- | 0.0968 | 10.3 | 20.2 | 476 | -- | -- |
| 515.54 | 1.06 | 9.65 | 0.84 | -- | -- | -- | -- | 0.0057 | -- | -- | -- | -- | -- |
| 155.55 | 0.583 | 9.61 | -- | 2.52 | -- | -- | -- | -0.0924 | 9.79 | -- | -- | -- | -- |
| 380.4 | 0.908 | 9.63 | -- | -- | -2.28 | -- | -- | 0.102 | -- | 24.1 | 752 | -- | -- |
| 534.18 | 1.08 | 9.67 | -- | -- | -- | -- | -- | -0.0875 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 93.03 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 23 | 7 |
| 2 | 93.03 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 21 | 9 |
| 3 | 93.03 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 13 |
| 4 | 93.04 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 19 | 93.11 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 3 | 3 |
| 47 | 94.06 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 15 | 20 |
| 67 | 94.45 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 16 | 14 |
| 69 | 94.46 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 23 | 21 |
| 79 | 94.54 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 16 | 2 |
| 80 | 94.55 | radiation | 1.0 | 14400 | > th | dose independent | sin | 11 | NA |
| 86 | 94.72 | radiation | 20.0 | 4320 | > th | dose dependent | rect. | 15 | 17 |
| 93 | 94.84 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 16 | 10 |
| 95 | 94.85 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 16 | 12 |
| 106 | 94.93 | radiation | 1.0 | 14400 | < th | dose independent | sin | 10 | NA |
| 107 | 94.93 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 118 | 94.99 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 23 |
| 135 | 95.14 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 17 | 2 |
| 141 | 95.17 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 14 | 17 |
| 167 | 95.25 | radiation | 20.0 | 4320 | < th | dose dependent | rect. | 17 | 13 |
| 179 | 95.28 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 21 |
| 220 | 95.39 | radiation | 20.0 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 223 | 95.40 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 224 | 95.40 | radiation | 1.0 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 246 | 95.45 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 16 | 5 |
| 265 | 95.49 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 24 | 9 |
| 268 | 95.50 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 9 | 22 |
| 271 | 95.50 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 10 | 9 |
| 275 | 95.52 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 278 | 95.52 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 24 | 9 |
| 290 | 95.52 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 24 | 9 |
| 298 | 95.53 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 22 | 11 |
| 309 | 95.54 | radiation | 1.0 | 14400 | > th | dose independent | no | NA | NA |
| 317 | 95.54 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 4 | 15 |
| 398 | 95.59 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 24 | 7 |
| 403 | 95.59 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 5 | 4 |
| 405 | 95.59 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 22 | 11 |
| 406 | 95.60 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 24 | 7 |
| 416 | 95.60 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 22 | 11 |
| 419 | 95.60 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 15 | 5 |
| 421 | 95.60 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 24 | 7 |
| 424 | 95.60 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 22 | 11 |
| 428 | 95.61 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 24 | 9 |
| 439 | 95.63 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 11 | 12 |
| 457 | 95.66 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 6 | 2 |
| 467 | 95.67 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 5 | 4 |
| 482 | 95.68 | radiation | 20.0 | 4320 | < th | dose dependent | rect. | 17 | 9 |
| 486 | 95.69 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 6 | 2 |
| 492 | 95.69 | radiation | 1.0 | 4320 | > th | dose dependent | rect. | 17 | 13 |
| 511 | 95.70 | radiation | 20.0 | 4320 | < th | dose dependent | rect. | 17 | 11 |
| 522 | 95.72 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 531 | 95.72 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 2 | 16 |
| 544 | 95.74 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 12 | 10 |
| 586 | 95.77 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 24 | 7 |
| 622 | 95.81 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 15 | 3 |
| 626 | 95.81 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 21 | 21 |
| 634 | 95.82 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 24 | 18 |
| 645 | 95.83 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 3 | 15 |
| 709 | 95.90 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 15 | 3 |
| 738 | 95.91 | radiation | 30.0 | 4320 | > th | dose independent | rect. | 15 | 17 |
| 789 | 95.96 | radiation | 1.0 | 14400 | < th | dose independent | no | NA | NA |
| 806 | 95.96 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 4 | 21 |
| 834 | 95.97 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 15 | 11 |
| 885 | 95.98 | temperature | 10.0 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 915 | 96.00 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 15 | 7 |
| 973 | 96.02 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 8 | 1 |