BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0884700 Os01g0884700|Os01g0884700
         (270 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G10080.1  | chr4:6300454-6302560 REVERSE LENGTH=326             84   9e-17
AT4G13530.1  | chr4:7866808-7868555 FORWARD LENGTH=271             74   1e-13

>AT4G10080.1 | chr4:6300454-6302560 REVERSE LENGTH=326
          Length = 325

 Score = 83.6 bits (205), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 39/97 (40%), Positives = 65/97 (67%), Gaps = 4/97 (4%)

Query: 150 WWHLPMGVLRAWALRAARSVWSLPVAVALLGIAVLGRRLYRMRRQSKAVARVRLVLDEKK 209
           WW +P  +L+    R    VWS+ +A A++G+ +LGRRLY M+++++    +++ +D+KK
Sbjct: 228 WWKMPFVLLKYSVFRIG-PVWSVSMAAAVMGLVLLGRRLYNMKKKAQRF-HLKVTIDDKK 285

Query: 210 ASQFKAQASRLNESFPMARRAPIMKPLLPANGVTPWP 246
           AS+  +QA+RLNE F   RR P+++P LP+ G   WP
Sbjct: 286 ASRVMSQAARLNEVFTEVRRVPVIRPALPSPG--AWP 320



>AT4G13530.1 | chr4:7866808-7868555 FORWARD LENGTH=271
          Length = 270

 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 66/97 (68%), Gaps = 6/97 (6%)

Query: 150 WWHLPMGVLRAWALRAARSVWSLPVAVALLGIAVLGRRLYRMRRQSKAVARVRLVLDEKK 209
           WW +P+ VL+   L+    +WSL +A A +G  +LGRRLY M+++++++ +++++LD+KK
Sbjct: 173 WWKIPIEVLKYCVLKI-NPIWSLSMAAAFVGFVMLGRRLYNMKKKTRSL-QLKVLLDDKK 230

Query: 210 ASQFKAQASRLNESFPMARRAPIMKPLLPAN-GVTPW 245
            +     A+R NE+  + +R PI++P LP++ G+  W
Sbjct: 231 VAN---HAARWNEAISVVKRVPIIRPALPSSVGMNQW 264



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.133    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,403,564
Number of extensions: 131522
Number of successful extensions: 284
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 283
Number of HSP's successfully gapped: 2
Length of query: 270
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 173
Effective length of database: 8,447,217
Effective search space: 1461368541
Effective search space used: 1461368541
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)