BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0883200 Os01g0883200|AK058727
         (383 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0883200  Hypothetical protein                                765   0.0  
Os05g0422600  Conserved hypothetical protein                      332   3e-91

>Os01g0883200 Hypothetical protein
          Length = 383

 Score =  765 bits (1976), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/383 (97%), Positives = 372/383 (97%)

Query: 1   MGEFSGMATTGALYSGQVMPITSRDGSGTKPKGTRLERAIRDLQKIAAEYRPPAIDINEV 60
           MGEFSGMATTGALYSGQVMPITSRDGSGTKPKGTRLERAIRDLQKIAAEYRPPAIDINEV
Sbjct: 1   MGEFSGMATTGALYSGQVMPITSRDGSGTKPKGTRLERAIRDLQKIAAEYRPPAIDINEV 60

Query: 61  DPNGQVAVKRRLPPEVKQKLAKVARLSANHGKIQEHELMDRLMGIVGHLVQRRTLRRNMK 120
           DPNGQVAVKRRLPPEVKQKLAKVARLSANHGKIQEHELMDRLMGIVGHLVQRRTLRRNMK
Sbjct: 61  DPNGQVAVKRRLPPEVKQKLAKVARLSANHGKIQEHELMDRLMGIVGHLVQRRTLRRNMK 120

Query: 121 EMVESGLSAKQEKADKFQRVKMEINEMIKSRVAAKAKVNEHHSGSADDFQIANDEKRYLK 180
           EMVESGLSAKQEKADKFQRVKMEINEMIKSRVAAKAKVNEHHSGSADDFQIANDEKRYLK
Sbjct: 121 EMVESGLSAKQEKADKFQRVKMEINEMIKSRVAAKAKVNEHHSGSADDFQIANDEKRYLK 180

Query: 181 GKSVMDAALEDRICDLYDLYVEGMDEDKGPQSRKLYVELAELWPEGSMDNVGIKDAINRS 240
           GKSVMDAALEDRICDLYDLYVEGMDEDKGPQSRKLYVELAELWPEGSMDNVGIKDAINRS
Sbjct: 181 GKSVMDAALEDRICDLYDLYVEGMDEDKGPQSRKLYVELAELWPEGSMDNVGIKDAINRS 240

Query: 241 KERRRSLYNQQKVRNEERMXXXXXXXXXXXQDGYPVVMQSALIQQVAQPPITNPVATYPV 300
           KERRRSLYNQQKVRNEERM           QDGYPVVMQSALIQQVAQPPITNPVATYPV
Sbjct: 241 KERRRSLYNQQKVRNEERMKRKRLAAAAKLQDGYPVVMQSALIQQVAQPPITNPVATYPV 300

Query: 301 TDQGSKSFDRVREISASANPDDINRNTGEMKKKKRKPESDLVDTQANAMKGPSQHVEKNK 360
           TDQGSKSFDRVREISASANPDDINRNTGEMKKKKRKPESDLVDTQANAMKGPSQHVEKNK
Sbjct: 301 TDQGSKSFDRVREISASANPDDINRNTGEMKKKKRKPESDLVDTQANAMKGPSQHVEKNK 360

Query: 361 PPKRADEAVETVLCLPFYDQQPS 383
           PPKRADEAVETVLCLPFYDQQPS
Sbjct: 361 PPKRADEAVETVLCLPFYDQQPS 383



>Os05g0422600 Conserved hypothetical protein
          Length = 694

 Score =  332 bits (851), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 192/380 (50%), Positives = 237/380 (62%), Gaps = 48/380 (12%)

Query: 2   GEFSGMATTGALYSGQVMPITSR---DGSGTKPKGTRLERAIRDLQKIAAEYRPPAIDIN 58
           G+FSG+  +  +YS + M + ++   +GSGTK KGTRLERAIRDLQ I  EY+P  +D++
Sbjct: 302 GQFSGLHASSNIYSTETMHLATKIHTEGSGTKTKGTRLERAIRDLQNIVTEYKPQILDVH 361

Query: 59  EVDPNGQVAVKRRLPPEVKQKLAKVARLSANHGKIQEHELMDRLMGIVGHLVQRRTLRRN 118
           E + N QVAVKRRLP EVKQKLAKVARLSAN GKI EHEL++RLMGIVGHLV RRTL+RN
Sbjct: 362 EAEANCQVAVKRRLPQEVKQKLAKVARLSANQGKIPEHELINRLMGIVGHLVHRRTLKRN 421

Query: 119 MKEMVESGLSAKQEKADKFQRVKMEINEMIKSRVAAKAKVNEHHSGSADDFQ--IANDEK 176
           MKEMV+SGL AKQEKA K Q+VKMEI EM+K+R+A K K  EH   S D FQ  + +D++
Sbjct: 422 MKEMVQSGLCAKQEKAGKLQQVKMEIYEMVKARLATKPKGAEHKVESIDGFQDPVTHDDR 481

Query: 177 RYLKGKSVMDAALEDRICDLYDLYVEGMDEDKGPQSRKLYVELAELWPEGSMDNVGIKDA 236
             L+GKSVMDA LEDRICDLYDLYVEGMDEDKGPQSRKLY+E                  
Sbjct: 482 MALRGKSVMDAVLEDRICDLYDLYVEGMDEDKGPQSRKLYLE------------------ 523

Query: 237 INRSKERRRSLYNQQKVRNEERMXXXXXXXXXXXQDGYPVVMQSALIQQVAQPPITNPVA 296
                           VRN++RM           +D  P   QSA   Q     +T+   
Sbjct: 524 ----------------VRNDQRMKRRRLAAAAKLRDSDPAAPQSAQSLQ----NMTSTHT 563

Query: 297 TYPVTDQG----SKSFDRVREISASANPDDINRNTGEMKKKKRKPESDLVDTQANAMKGP 352
            YPV + G    S+S D+V E+S  A  D  NR++  MKK+K   E   V+      +  
Sbjct: 564 MYPVVNNGNSQSSRSVDKVNEMSVGAGSDG-NRSSTSMKKRKIDSEDRQVNPPKATAELH 622

Query: 353 SQHVEKNKPPKRADEAVETV 372
              +E  KP KRADEA ++ 
Sbjct: 623 HHGIEIQKPAKRADEATKSA 642



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.312    0.129    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,370,493
Number of extensions: 494646
Number of successful extensions: 1284
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1280
Number of HSP's successfully gapped: 2
Length of query: 383
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 280
Effective length of database: 11,657,759
Effective search space: 3264172520
Effective search space used: 3264172520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 157 (65.1 bits)