Os01g0883200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os01g0883200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 11.43 | 0.159 | 11.5 | 0.425 | 0.306 | -0.295 | -0.192 | 0.671 | 0.144 | 18.5 | 25.4 | 900 | -- | -- |
| 12.04 | 0.162 | 11.5 | 0.258 | 0.303 | -0.249 | -0.169 | -- | 0.0783 | 18.1 | 25.58 | 923 | -- | -- |
| 11.51 | 0.158 | 11.5 | 0.439 | 0.273 | -0.296 | -- | 0.714 | 0.14 | 18.4 | 25.6 | 1004 | -- | -- |
| 11.96 | 0.161 | 11.5 | 0.236 | 0.317 | -0.248 | -- | -- | 0.0797 | 18.3 | 25.41 | 835 | -- | -- |
| 14.61 | 0.178 | 11.5 | 0.468 | -- | -0.341 | -- | 0.818 | 0.163 | -- | 25.5 | 1258 | -- | -- |
| 13.78 | 0.174 | 11.5 | 0.166 | 0.274 | -- | -0.106 | -- | -0.00989 | 17.1 | -- | -- | -- | -- |
| 13.81 | 0.174 | 11.5 | 0.166 | 0.273 | -- | -- | -- | -0.0104 | 17.1 | -- | -- | -- | -- |
| 15.32 | 0.182 | 11.5 | 0.242 | -- | -0.287 | -- | -- | 0.0814 | -- | 25.57 | 1235 | -- | -- |
| 13.33 | 0.17 | 11.5 | -- | 0.317 | -0.189 | -- | -- | 0.0343 | 18 | 25.49 | 779 | -- | -- |
| 17.72 | 0.197 | 11.5 | 0.156 | -- | -- | -- | -- | -0.0173 | -- | -- | -- | -- | -- |
| 14.54 | 0.178 | 11.5 | -- | 0.27 | -- | -- | -- | -0.0289 | 17.1 | -- | -- | -- | -- |
| 16.75 | 0.191 | 11.5 | -- | -- | -0.226 | -- | -- | 0.0361 | -- | 25.5 | 1225 | -- | -- |
| 18.37 | 0.2 | 11.5 | -- | -- | -- | -- | -- | -0.0347 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 11.19 | temperature | 25 | 720 | > th | dose independent | rect. | 11 | 14 |
| 3 | 11.20 | temperature | 25 | 720 | < th | dose independent | rect. | 9 | 18 |
| 8 | 11.22 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 21 | 11.29 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 4 |
| 31 | 11.30 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 4 |
| 50 | 11.34 | temperature | 25 | 720 | > th | dose independent | sin | 18 | NA |
| 58 | 11.34 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 65 | 11.35 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 77 | 11.37 | temperature | 25 | 720 | > th | dose independent | rect. | 11 | 21 |
| 85 | 11.39 | temperature | 25 | 720 | < th | dose independent | sin | 18 | NA |
| 98 | 11.40 | radiation | 1 | 720 | < th | dose independent | rect. | 13 | 6 |
| 120 | 11.41 | radiation | 1 | 720 | < th | dose independent | rect. | 10 | 9 |
| 122 | 11.41 | radiation | 1 | 720 | < th | dose independent | rect. | 13 | 13 |
| 125 | 11.41 | radiation | 1 | 720 | < th | dose independent | rect. | 10 | 16 |
| 145 | 11.42 | radiation | 1 | 720 | > th | dose independent | rect. | 10 | 20 |
| 263 | 11.49 | radiation | 1 | 720 | < th | dose dependent | rect. | 13 | 6 |
| 264 | 11.49 | radiation | 1 | 720 | < th | dose dependent | rect. | 9 | 10 |
| 268 | 11.50 | radiation | 1 | 720 | > th | dose independent | rect. | 10 | 9 |
| 320 | 11.52 | temperature | 25 | 720 | > th | dose independent | rect. | 19 | 23 |
| 321 | 11.52 | temperature | 25 | 720 | < th | dose independent | rect. | 1 | 23 |
| 329 | 11.52 | radiation | 1 | 720 | < th | dose dependent | rect. | 9 | 18 |
| 350 | 11.53 | humidity | 90 | 720 | > th | dose dependent | rect. | 10 | 14 |
| 351 | 11.53 | radiation | 1 | 720 | < th | dose dependent | rect. | 13 | 14 |
| 354 | 11.54 | temperature | 25 | 720 | > th | dose independent | no | NA | NA |
| 355 | 11.54 | temperature | 25 | 720 | < th | dose independent | no | NA | NA |
| 399 | 11.55 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 17 |
| 403 | 11.55 | temperature | 25 | 720 | > th | dose independent | rect. | 17 | 23 |
| 415 | 11.56 | radiation | 1 | 720 | > th | dose independent | sin | 17 | NA |
| 417 | 11.56 | radiation | 1 | 720 | < th | dose independent | sin | 16 | NA |
| 420 | 11.56 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 434 | 11.56 | humidity | 90 | 720 | > th | dose dependent | rect. | 14 | 10 |
| 436 | 11.56 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 12 |
| 457 | 11.57 | temperature | 20 | 720 | > th | dose dependent | rect. | 13 | 12 |
| 459 | 11.57 | temperature | 20 | 720 | > th | dose dependent | rect. | 13 | 18 |
| 479 | 11.58 | temperature | 25 | 720 | > th | dose independent | rect. | 21 | 23 |
| 488 | 11.59 | temperature | 25 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 499 | 11.59 | temperature | 25 | 720 | < th | dose independent | rect. | 17 | 23 |
| 514 | 11.60 | humidity | 80 | 1440 | < th | dose independent | sin | 0 | NA |
| 549 | 11.61 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 4 |
| 556 | 11.61 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 13 |
| 606 | 11.62 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 4 |
| 634 | 11.63 | humidity | 80 | 1440 | > th | dose independent | sin | 0 | NA |
| 639 | 11.63 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 6 |
| 798 | 11.65 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 4 |
| 835 | 11.65 | temperature | 25 | 720 | > th | dose independent | rect. | 23 | 23 |
| 869 | 11.66 | humidity | 80 | 1440 | > th | dose independent | rect. | 15 | 1 |
| 903 | 11.66 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 15 |
| 997 | 11.68 | radiation | 1 | 1440 | < th | dose dependent | sin | 19 | NA |