Os05g0422600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0422600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.49 | 0.255 | 9 | -0.0534 | 0.243 | -0.127 | 0.109 | -1.71 | -0.0849 | 9.54 | 23.81 | 3382 | -- | -- |
| 30.74 | 0.258 | 9.04 | -0.207 | 0.243 | 0.455 | 0.0398 | -- | -0.124 | 9.54 | 14 | 9705 | -- | -- |
| 29.53 | 0.253 | 9 | -0.0497 | 0.242 | -0.125 | -- | -1.71 | -0.085 | 9.53 | 23.8 | 3302 | -- | -- |
| 30.53 | 0.257 | 9.05 | -0.177 | 0.231 | 0.421 | -- | -- | -0.12 | 9.56 | 14.09 | 11010 | -- | -- |
| 32.97 | 0.267 | 9.01 | -0.0339 | -- | -0.0869 | -- | -1.68 | -0.0773 | -- | 24.48 | 3186 | -- | -- |
| 33.03 | 0.269 | 9.06 | -0.415 | 0.24 | -- | 0.0801 | -- | -0.179 | 9.56 | -- | -- | -- | -- |
| 33.05 | 0.269 | 9.06 | -0.412 | 0.24 | -- | -- | -- | -0.179 | 9.57 | -- | -- | -- | -- |
| 33.89 | 0.271 | 9.04 | -0.148 | -- | 0.444 | -- | -- | -0.112 | -- | 14 | 10960 | -- | -- |
| 31.06 | 0.26 | 9.03 | -- | 0.24 | 0.442 | -- | -- | -0.107 | 9.5 | 13.57 | 11133 | -- | -- |
| 36.45 | 0.282 | 9.07 | -0.414 | -- | -- | -- | -- | -0.179 | -- | -- | -- | -- | -- |
| 37.52 | 0.287 | 9.05 | -- | 0.241 | -- | -- | -- | -0.133 | 9.7 | -- | -- | -- | -- |
| 34.22 | 0.272 | 9.04 | -- | -- | 0.504 | -- | -- | -0.0796 | -- | 13.63 | 10985 | -- | -- |
| 40.97 | 0.299 | 9.06 | -- | -- | -- | -- | -- | -0.133 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.70 | temperature | 25 | 270 | > th | dose dependent | rect. | 7 | 4 |
| 4 | 27.90 | temperature | 25 | 270 | > th | dose dependent | rect. | 7 | 6 |
| 26 | 28.23 | temperature | 25 | 270 | > th | dose dependent | sin | 6 | NA |
| 35 | 28.31 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 6 |
| 45 | 28.39 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 4 |
| 82 | 28.57 | temperature | 25 | 720 | > th | dose independent | rect. | 20 | 5 |
| 107 | 28.67 | temperature | 25 | 30 | > th | dose dependent | rect. | 7 | 10 |
| 166 | 28.92 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 6 |
| 182 | 28.96 | temperature | 30 | 10 | < th | dose independent | rect. | 11 | 23 |
| 194 | 28.98 | temperature | 25 | 720 | < th | dose independent | rect. | 18 | 10 |
| 197 | 28.98 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 24 | 8 |
| 198 | 28.98 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 10 |
| 212 | 29.01 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 13 |
| 219 | 29.03 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 238 | 29.07 | temperature | 20 | 720 | < th | dose independent | rect. | 4 | 2 |
| 243 | 29.08 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 259 | 29.11 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 6 |
| 265 | 29.12 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 6 |
| 406 | 29.30 | temperature | 25 | 30 | > th | dose dependent | rect. | 7 | 13 |
| 416 | 29.32 | wind | 5 | 270 | < th | dose independent | rect. | 11 | 20 |
| 438 | 29.34 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 13 |
| 454 | 29.36 | temperature | 20 | 30 | > th | dose dependent | rect. | 24 | 7 |
| 482 | 29.38 | temperature | 25 | 90 | > th | dose dependent | rect. | 21 | 20 |
| 507 | 29.40 | temperature | 25 | 30 | > th | dose dependent | rect. | 7 | 17 |
| 510 | 29.41 | temperature | 20 | 4320 | > th | dose independent | sin | 16 | NA |
| 542 | 29.42 | temperature | 25 | 90 | > th | dose dependent | rect. | 18 | 23 |
| 544 | 29.43 | temperature | 20 | 4320 | < th | dose independent | sin | 15 | NA |
| 604 | 29.46 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 2 |
| 631 | 29.48 | wind | 5 | 270 | < th | dose independent | rect. | 13 | 18 |
| 633 | 29.48 | temperature | 25 | 4320 | < th | dose dependent | rect. | 17 | 9 |
| 642 | 29.49 | temperature | 25 | 4320 | < th | dose dependent | rect. | 17 | 7 |
| 669 | 29.51 | humidity | 70 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 670 | 29.51 | temperature | 25 | 90 | > th | dose independent | rect. | 24 | 7 |
| 779 | 29.56 | humidity | 60 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 805 | 29.57 | temperature | 25 | 4320 | < th | dose dependent | sin | 15 | NA |
| 843 | 29.59 | temperature | 10 | 4320 | > th | dose dependent | rect. | 22 | 1 |
| 855 | 29.60 | wind | 5 | 43200 | < th | dose independent | rect. | 23 | 2 |
| 904 | 29.61 | temperature | 25 | 30 | > th | dose dependent | rect. | 16 | 23 |
| 905 | 29.62 | wind | 5 | 43200 | > th | dose independent | rect. | 23 | 2 |
| 912 | 29.62 | temperature | 30 | 270 | < th | dose dependent | sin | 3 | NA |
| 964 | 29.63 | temperature | 25 | 90 | > th | dose dependent | rect. | 14 | 23 |
| 973 | 29.64 | wind | 1 | 43200 | > th | dose independent | rect. | 6 | 23 |