BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0879400 Os01g0879400|AK065053
         (472 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0879400  Glycoside hydrolase, family 43 protein              967   0.0  
Os12g0406100  Glycoside hydrolase, family 43 protein              650   0.0  

>Os01g0879400 Glycoside hydrolase, family 43 protein
          Length = 472

 Score =  967 bits (2500), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 464/472 (98%), Positives = 464/472 (98%)

Query: 1   MRINNGRMKMRNKQRKSSALNFDAGCRSSLSFIVWSLVGVALIVCFFSVVRQADTRQNHI 60
           MRINNGRMKMRNKQRKSSALNFDAGCRSSLSFIVWSLVGVALIVCFFSVVRQADTRQNHI
Sbjct: 1   MRINNGRMKMRNKQRKSSALNFDAGCRSSLSFIVWSLVGVALIVCFFSVVRQADTRQNHI 60

Query: 61  YFRHLSATRXXXXXXXXHFRLPPPHKVNPRAVKRRGPRKAPKVIDQYLDESSAVHALFFP 120
           YFRHLSATR        HFRLPPPHKVNPRAVKRRGPRKAPKVIDQYLDESSAVHALFFP
Sbjct: 61  YFRHLSATRELEEIEEEHFRLPPPHKVNPRAVKRRGPRKAPKVIDQYLDESSAVHALFFP 120

Query: 121 DERSAVNPTKGGNDSMYFYPGRVWLDTDGHAIQAHGGGILYDHITAKYYWYGENKDGLTY 180
           DERSAVNPTKGGNDSMYFYPGRVWLDTDGHAIQAHGGGILYDHITAKYYWYGENKDGLTY
Sbjct: 121 DERSAVNPTKGGNDSMYFYPGRVWLDTDGHAIQAHGGGILYDHITAKYYWYGENKDGLTY 180

Query: 181 QTHPKSTYRVDIIGVSCYSSKDLWSWTNEGIVLPGEPTNFTHDLHKSKVLERPKVIYNDH 240
           QTHPKSTYRVDIIGVSCYSSKDLWSWTNEGIVLPGEPTNFTHDLHKSKVLERPKVIYNDH
Sbjct: 181 QTHPKSTYRVDIIGVSCYSSKDLWSWTNEGIVLPGEPTNFTHDLHKSKVLERPKVIYNDH 240

Query: 241 TGQYVMWMHIDDANYTKASVGVAVSNSPTGPFTYLYSFRPHGFESRDMTIFKDDDGSAYL 300
           TGQYVMWMHIDDANYTKASVGVAVSNSPTGPFTYLYSFRPHGFESRDMTIFKDDDGSAYL
Sbjct: 241 TGQYVMWMHIDDANYTKASVGVAVSNSPTGPFTYLYSFRPHGFESRDMTIFKDDDGSAYL 300

Query: 301 FYSSRDNTELHVSPLTKDYLNITVAMRRILIRRHREAPAVFKLQGTYYMITSGCSGWAPN 360
           FYSSRDNTELHVSPLTKDYLNITVAMRRILIRRHREAPAVFKLQGTYYMITSGCSGWAPN
Sbjct: 301 FYSSRDNTELHVSPLTKDYLNITVAMRRILIRRHREAPAVFKLQGTYYMITSGCSGWAPN 360

Query: 361 RALAHAAESIMGPWETLGNPCVGGNRFFRLTTFLSQSTFVLPLPGLPGTFIFMADRWNPS 420
           RALAHAAESIMGPWETLGNPCVGGNRFFRLTTFLSQSTFVLPLPGLPGTFIFMADRWNPS
Sbjct: 361 RALAHAAESIMGPWETLGNPCVGGNRFFRLTTFLSQSTFVLPLPGLPGTFIFMADRWNPS 420

Query: 421 NLKDSRYVWLPLFIGGLADEPLDYSFGFPAWSRVSIYWHRKWRLPESWKGYT 472
           NLKDSRYVWLPLFIGGLADEPLDYSFGFPAWSRVSIYWHRKWRLPESWKGYT
Sbjct: 421 NLKDSRYVWLPLFIGGLADEPLDYSFGFPAWSRVSIYWHRKWRLPESWKGYT 472



>Os12g0406100 Glycoside hydrolase, family 43 protein
          Length = 466

 Score =  650 bits (1677), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 307/464 (66%), Positives = 361/464 (77%), Gaps = 2/464 (0%)

Query: 8   MKMRNKQRKSSALNFDAGCRSSLSFIVWSLVGVALIVCFFSVVRQADTRQNHIYFRHLSA 67
           M +R+KQ K+ A    A    SL+  VWSL  + ++V F  ++   +     I+  + S 
Sbjct: 1   MGLRSKQPKALAFRCYAASHRSLTLAVWSLAALVVVVNFHLLIIHKEDESTSIHEINRSI 60

Query: 68  TRXXXXXXXXHFRLPPPH-KVNPRAVKRRGPRKAPKVIDQYLDESSAVHALFFPDERSAV 126
                      FR+ PP  + NPRAV+R+G +K P V+D++LDESSAVH +FFP+   A+
Sbjct: 61  VSELEEVEEEKFRVSPPRSRRNPRAVRRKGEQKPPSVVDEFLDESSAVHDMFFPERNMAI 120

Query: 127 NPTKGGNDSMYFY-PGRVWLDTDGHAIQAHGGGILYDHITAKYYWYGENKDGLTYQTHPK 185
           +P  GGNDSMYFY PGRVWLDTDG+ IQAHGGG+LYD  T  Y+WYGENKDG TY+ H K
Sbjct: 121 DPINGGNDSMYFYYPGRVWLDTDGNPIQAHGGGVLYDEKTETYFWYGENKDGKTYKAHSK 180

Query: 186 STYRVDIIGVSCYSSKDLWSWTNEGIVLPGEPTNFTHDLHKSKVLERPKVIYNDHTGQYV 245
              RVDI+GVSCYSSKDLW+W NEG+VL GE  N THDLHKS VLERPKVIYND TG+YV
Sbjct: 181 GADRVDIVGVSCYSSKDLWTWRNEGVVLRGEKKNVTHDLHKSNVLERPKVIYNDRTGKYV 240

Query: 246 MWMHIDDANYTKASVGVAVSNSPTGPFTYLYSFRPHGFESRDMTIFKDDDGSAYLFYSSR 305
           MWMHIDD NYTKASVGVA+S+SPTGPF+YLYS +PH  ESRDMTIFKDD+G AYL YSS 
Sbjct: 241 MWMHIDDTNYTKASVGVAISDSPTGPFSYLYSKQPHDCESRDMTIFKDDNGKAYLIYSSE 300

Query: 306 DNTELHVSPLTKDYLNITVAMRRILIRRHREAPAVFKLQGTYYMITSGCSGWAPNRALAH 365
           DN+ELH+  LT DYL++T  MRR+LI +HREAPA+FK +GTYYMITSGC+GWAPN ALAH
Sbjct: 301 DNSELHIGQLTDDYLDVTDNMRRLLIAQHREAPALFKYEGTYYMITSGCTGWAPNTALAH 360

Query: 366 AAESIMGPWETLGNPCVGGNRFFRLTTFLSQSTFVLPLPGLPGTFIFMADRWNPSNLKDS 425
           AA +IMGPWETLGNPCVGGN  FR TTF SQSTFVLP+PGL G+FIFMADRW+PS L+DS
Sbjct: 361 AATAIMGPWETLGNPCVGGNDIFRSTTFFSQSTFVLPIPGLSGSFIFMADRWSPSELRDS 420

Query: 426 RYVWLPLFIGGLADEPLDYSFGFPAWSRVSIYWHRKWRLPESWK 469
           RYVWLPL +GGL DE  DYSF FP WSRVSIYWHR+WRLPE W+
Sbjct: 421 RYVWLPLTVGGLPDEAADYSFMFPLWSRVSIYWHRRWRLPEGWR 464



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.138    0.450 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 18,546,068
Number of extensions: 838529
Number of successful extensions: 1561
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1559
Number of HSP's successfully gapped: 2
Length of query: 472
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 367
Effective length of database: 11,553,331
Effective search space: 4240072477
Effective search space used: 4240072477
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 158 (65.5 bits)