BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0875000 Os01g0875000|AK058560
         (318 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0875000  Conserved hypothetical protein                      263   1e-70
Os08g0104800  Conserved hypothetical protein                       67   2e-11

>Os01g0875000 Conserved hypothetical protein
          Length = 318

 Score =  263 bits (672), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 153/318 (48%), Positives = 153/318 (48%)

Query: 1   MNAFFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSQLTLLVGQLHLPPGGRWLDEY 60
           MNAFFT                               HSQLTLLVGQLHLPPGGRWLDEY
Sbjct: 1   MNAFFTSLARGLDDLSSGGGLSSLPALLRAAALLRGLHSQLTLLVGQLHLPPGGRWLDEY 60

Query: 61  MDETARLWEACLAVKVGLXXXXXXXXXXXXXXXXMDDWLQDPSPLSTRQVXXXXXXXXXX 120
           MDETARLWEACLAVKVGL                MDDWLQDPSPLSTRQV          
Sbjct: 61  MDETARLWEACLAVKVGLAAVERYCAAASCAAAAMDDWLQDPSPLSTRQVMRAISASRRE 120

Query: 121 XXXXXXXXXXLSEARIAPXXXXXXXXXXXXXXXXXXXGFNGFRGLLYALHNXXXXXXXXX 180
                     LSEARIAP                   GFNGFRGLLYALHN         
Sbjct: 121 AMAAEEENRALSEARIAPLSLQLDERLLLRAADARLSGFNGFRGLLYALHNASSLLLLVL 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXFVASIAMLQQRMXXXXXXXXXXXXXXXXIRMYEFR 240
                                    FVASIAMLQQRM                IRMYEFR
Sbjct: 181 ASGAVSCAAAAAGPCSADGAADAGGFVASIAMLQQRMAEEADADGSAGAARGGIRMYEFR 240

Query: 241 CXXXXXXXXXXXXXXXXXXGPRKQQCEXXXXXXXXXXXELKAWLDVLRTGTDGLVCQLDD 300
           C                  GPRKQQCE           ELKAWLDVLRTGTDGLVCQLDD
Sbjct: 241 CARAAVEAAHEEVERAVAAGPRKQQCEDGDGGVKDKVDELKAWLDVLRTGTDGLVCQLDD 300

Query: 301 FLDDIVEGRKELSDLCSH 318
           FLDDIVEGRKELSDLCSH
Sbjct: 301 FLDDIVEGRKELSDLCSH 318



>Os08g0104800 Conserved hypothetical protein
          Length = 315

 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 28/40 (70%), Positives = 34/40 (85%)

Query: 38 HSQLTLLVGQLHLPPGGRWLDEYMDETARLWEACLAVKVG 77
          H+QL  +VG+LHLP G RWLDEYMDET+RLW+ACL V+ G
Sbjct: 44 HAQLLEVVGRLHLPAGERWLDEYMDETSRLWDACLLVRAG 83



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.325    0.140    0.450 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,243,898
Number of extensions: 114861
Number of successful extensions: 287
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 282
Number of HSP's successfully gapped: 2
Length of query: 318
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 217
Effective length of database: 11,762,187
Effective search space: 2552394579
Effective search space used: 2552394579
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 156 (64.7 bits)