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Os01g0875000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.66 (0.0375) R2 : 0.8
β1 : -- (--) R2dD : -- R2D : --
β2 : 8.63 (0.27) R2dC : 3.58 R2C : -0.612
β3 : 5.25 (0.264) R2dE : 1.41 R2E : -2.78
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0134 (0.0789) R2dN8 : -2.19e-05 R2N8 : -0.00604
σ : 0.696
deviance : 223.56
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_____
C
peak time of C : 16.4
E
wheather : temperature
threshold : 2.009
memory length : 297
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 20.8
open length of G : 9.12

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
219.25 0.696 8.65 -0.448 7.93 4.76 2.4 2.5 -0.0576 16.5 7.794 263 21.2 8.87
219.97 0.691 8.67 -0.59 8.21 4.99 0.588 -- -0.0502 16.4 6.744 273 21.1 8.86
219.7 0.69 8.73 -0.494 8.55 5.22 -- 0.41 -0.123 16.5 3.337 278 21 9.1
214.44 0.682 8.69 -0.583 8.93 5.62 -- -- -0.0967 16.3 2.106 299 20.8 9.03
667.65 1.2 8.5 -1.19 -- 3.51 -- -0.548 -0.108 -- 11.31 1147 3.65 8.2
376.73 0.91 8.56 -0.316 3.75 -- -0.519 -- 0.212 17.3 -- -- -- --
377.4 0.91 8.56 -0.316 3.74 -- -- -- 0.21 17.3 -- -- -- --
288.93 0.792 8.51 -0.338 -- 3.91 -- -- 0.0903 -- -41.36 365 9.52 8.93
223.56 0.696 8.66 -- 8.63 5.25 -- -- -0.0134 16.4 2.009 297 20.8 9.12
1109 1.56 8.51 -0.446 -- -- -- -- 0.116 -- -- -- -- --
380.03 0.912 8.55 -- 3.75 -- -- -- 0.245 17.3 -- -- -- --
282.49 0.783 8.51 -- -- 4.26 -- -- 0.14 -- -50.54 328 10.3 6.99
1114.25 1.56 8.5 -- -- -- -- -- 0.166 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 224.29 temperature 10.0 270 > th dose dependent rect. 21 9
2 226.21 radiation 1.0 270 > th dose independent rect. 11 6
3 227.11 precipitation 0.1 270 < th dose independent rect. 11 18
4 227.11 precipitation 0.1 270 < th dose dependent rect. 11 18
6 229.06 wind 9.0 270 < th dose independent rect. 11 6
7 229.45 precipitation 0.1 270 < th dose independent rect. 11 6
8 229.45 precipitation 0.1 270 < th dose dependent rect. 11 6
10 230.11 temperature 10.0 270 > th dose independent rect. 11 6
11 230.11 atmosphere 1015.0 270 < th dose independent rect. 11 6
12 230.11 temperature 10.0 270 > th dose independent rect. 17 18
14 230.97 wind 9.0 270 < th dose independent rect. 17 18
16 232.38 atmosphere 995.0 270 > th dose independent rect. 11 6
19 233.13 humidity 50.0 270 > th dose independent rect. 17 18
25 234.01 precipitation 0.1 270 < th dose independent rect. 21 9
26 234.01 precipitation 0.1 270 < th dose dependent rect. 21 9
27 234.31 atmosphere 995.0 270 > th dose independent rect. 17 18
45 236.83 wind 1.0 270 > th dose independent rect. 11 6
46 237.06 wind 1.0 270 > th dose independent rect. 4 7
47 237.16 radiation 10.0 270 < th dose independent rect. 21 9
49 237.39 temperature 10.0 270 > th dose independent rect. 21 9
50 237.39 temperature 30.0 270 < th dose independent rect. 21 9
51 237.39 humidity 50.0 270 > th dose independent rect. 21 9
54 237.39 atmosphere 995.0 270 > th dose independent rect. 21 9
58 237.39 temperature 10.0 270 > th dose independent rect. 6 15
59 237.40 wind 9.0 270 < th dose independent rect. 21 9
60 237.87 radiation 40.0 270 < th dose dependent rect. 21 9
63 238.17 wind 9.0 270 < th dose independent rect. 11 18
64 238.37 precipitation 0.1 270 < th dose independent rect. 5 6
65 238.37 precipitation 0.1 270 < th dose dependent rect. 5 6
68 238.72 temperature 10.0 270 > th dose independent rect. 5 6
69 238.72 atmosphere 995.0 270 > th dose independent rect. 5 6
70 238.72 atmosphere 1015.0 270 < th dose independent rect. 5 6
71 238.72 temperature 10.0 270 > th dose independent rect. 11 18
76 239.33 wind 9.0 270 < th dose independent rect. 5 6
77 239.89 humidity 50.0 270 > th dose independent rect. 5 6
79 240.18 temperature 10.0 270 > th dose dependent rect. 11 18
95 240.57 wind 9.0 270 < th dose dependent rect. 21 9
114 242.66 wind 9.0 270 < th dose independent rect. 6 15
115 242.99 atmosphere 1015.0 270 < th dose independent rect. 6 15
119 243.29 humidity 90.0 270 < th dose independent rect. 11 6
127 244.66 atmosphere 995.0 270 > th dose independent rect. 11 18
128 244.79 wind 1.0 270 > th dose independent rect. 17 17
134 245.32 temperature 10.0 90 > th dose dependent rect. 13 17
154 245.74 wind 1.0 270 > th dose independent rect. 16 19
162 247.22 precipitation 0.1 270 < th dose independent rect. 17 18
163 247.22 precipitation 0.1 270 < th dose dependent rect. 17 18
173 248.25 wind 9.0 270 < th dose independent rect. 1 15
175 248.57 humidity 50.0 270 > th dose dependent rect. 22 8
181 249.54 temperature 10.0 270 > th dose independent rect. 16 9
182 249.54 radiation 40.0 270 < th dose independent rect. 16 9
183 249.54 temperature 10.0 270 > th dose independent rect. 1 15
184 249.54 atmosphere 1015.0 270 < th dose independent rect. 1 15
192 249.92 atmosphere 995.0 270 > th dose independent rect. 1 15
195 250.56 wind 9.0 270 < th dose independent rect. 16 9
205 250.90 wind 9.0 270 < th dose dependent rect. 11 6
208 251.03 temperature 10.0 10 > th dose dependent rect. 13 17
228 251.88 precipitation 0.1 270 < th dose independent rect. 1 15
229 251.88 precipitation 0.1 270 < th dose dependent rect. 1 15
238 252.57 radiation 1.0 90 > th dose independent rect. 6 7
267 254.08 temperature 30.0 270 < th dose independent rect. 17 17
268 254.11 radiation 40.0 270 < th dose dependent rect. 16 7
270 254.15 temperature 30.0 270 < th dose independent rect. 5 6
271 254.20 temperature 10.0 270 > th dose dependent rect. 11 5
272 254.21 wind 1.0 30 > th dose independent rect. 19 18
276 254.41 radiation 1.0 270 > th dose independent rect. 4 7
287 254.46 atmosphere 1015.0 270 < th dose independent rect. 22 8
305 254.93 wind 9.0 90 < th dose independent rect. 13 17
325 255.41 temperature 10.0 90 > th dose independent rect. 13 17
327 255.42 radiation 40.0 10 < th dose independent rect. 12 18
397 257.40 radiation 40.0 270 < th dose independent rect. 17 17
435 258.04 radiation 1.0 10 > th dose independent rect. 6 7
445 258.44 radiation 1.0 270 < th dose dependent rect. 22 16
453 258.68 atmosphere 1015.0 270 < th dose independent rect. 11 18
455 258.71 precipitation 0.1 270 < th dose independent rect. 6 15
456 258.71 precipitation 0.1 270 < th dose dependent rect. 6 15
460 258.79 precipitation 0.1 10 < th dose independent rect. 6 7
461 258.79 precipitation 0.1 10 < th dose dependent rect. 6 7
468 258.90 radiation 1.0 270 < th dose dependent sin 8 NA
477 259.03 radiation 1.0 270 < th dose independent rect. 22 16
478 259.07 atmosphere 1015.0 270 < th dose independent rect. 17 18
486 259.21 temperature 10.0 10 > th dose independent rect. 6 7
488 259.21 atmosphere 995.0 10 > th dose independent rect. 6 7
489 259.21 atmosphere 1015.0 10 < th dose independent rect. 6 7
490 259.21 temperature 10.0 10 > th dose independent rect. 13 17
505 259.51 wind 9.0 10 < th dose independent rect. 13 17
513 259.64 temperature 30.0 270 < th dose independent rect. 6 4
545 260.14 radiation 20.0 90 < th dose dependent sin 6 NA
561 260.47 radiation 1.0 270 > th dose independent rect. 6 4
570 260.75 wind 9.0 10 < th dose independent rect. 6 7
587 260.99 atmosphere 995.0 270 > th dose independent rect. 16 8
590 261.05 atmosphere 995.0 270 > th dose dependent rect. 11 5
646 262.39 temperature 10.0 1440 > th dose independent rect. 7 7
649 262.39 atmosphere 995.0 1440 > th dose independent rect. 7 7
650 262.39 temperature 10.0 1440 > th dose independent rect. 14 17
655 262.41 radiation 1.0 270 < th dose independent sin 8 NA
680 263.22 wind 1.0 270 > th dose independent rect. 16 8
702 263.45 precipitation 0.1 10 < th dose independent rect. 12 7
703 263.45 precipitation 0.1 10 < th dose dependent rect. 12 7
715 263.61 humidity 50.0 270 > th dose independent rect. 11 5
740 264.03 atmosphere 1010.0 10 < th dose independent rect. 12 7
766 264.69 atmosphere 995.0 10 > th dose independent rect. 13 17
769 264.73 wind 9.0 10 < th dose independent rect. 12 7
791 264.97 temperature 10.0 10 > th dose independent rect. 12 7
794 264.97 temperature 10.0 10 > th dose independent rect. 19 17
795 264.97 atmosphere 995.0 10 > th dose independent rect. 19 17
811 265.20 wind 1.0 270 > th dose independent rect. 6 15
819 265.54 wind 9.0 270 < th dose dependent rect. 11 18
848 266.28 wind 1.0 270 > th dose independent rect. 11 17
857 266.34 humidity 50.0 270 > th dose independent rect. 16 7
869 266.46 radiation 40.0 30 < th dose independent rect. 12 7
890 266.67 wind 9.0 10 < th dose independent rect. 19 17
895 266.83 radiation 1.0 270 > th dose independent sin 8 NA
941 267.53 temperature 10.0 1440 > th dose independent rect. 14 6
944 267.53 temperature 10.0 1440 > th dose independent rect. 20 18
947 267.53 atmosphere 995.0 1440 > th dose independent rect. 20 18
997 268.43 atmosphere 1015.0 90 < th dose independent rect. 13 17